SitesBLAST

Q96XT4 2-oxoacid:ferredoxin oxidoreductase 2, subunit beta; OFOR2; EC 1.2.7.11 from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii) (see paper)
44% identity, 68% coverage: 21:209/276 of query aligns to 11:200/304 of Q96XT4

query
sites
Q96XT4

W

W

C
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C

P

P

G

G

C
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C

G

G

D

D

Y

F

S

G

V

I

L

L

A

R

G

A

I

E

T

E

R

M

A

A

M

I

A

R

T

E

M

L

G

G

L

I

E

N

R

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H

K

D

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V

V

V

V

I

V

V

S

S

G

G

I
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I

G
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G

C
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C

S
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S

S

G

R

K

I

I

P

P

A

H

Y

F

T

M

S

N

-

L

-

P

V

I

Y

S

G

G

Y

V

H

H

T

T

V

L

H

H

G

G

R

R

S

S

L

I

A

A

V

F

A

A

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T

G

G

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I

K

K

L

L

A

S

R

N

P

P

E

S

L

L

N

E

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V

L

I

I

V

F

N

G

V

G

G

D
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D

G
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G

D
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D

G

G

F

L

S

G

I

I

G

G

G

M

N

G

H

H

F

F

L

V

H

H

A

L

C

G

R

R

N

N

V

I

D

D

M

I

T

A

Y

V

I

L

V

V

M

H

D

N

N
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N

Q

G

V
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V

Y

Y

G
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G

M
x
L

T

T

K

K

G

G

Q

Q

A

A

S

S

P

P

T

T

T

L

E

H

A

R

D

G

W

-

C

E

E

K

S

T

K

K

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L

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P

E

K

G

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P

N

G

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N

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P

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L

A

A

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A

A

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L

A

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C

A

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G

A

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T

F

F

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V

A

A

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R

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A

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Y

C12 (= C22) binding [4Fe-4S] cluster
C15 (= C25) binding [4Fe-4S] cluster
IGCS 44:47 (= IGCS 54:57) binding thiamine diphosphate
C46 (= C56) binding [4Fe-4S] cluster
D90 (= D98) binding Mg(2+)
GD 91:92 (= GD 99:100) binding thiamine diphosphate
N118 (= N126) binding Mg(2+)
V120 (= V128) binding Mg(2+)
GL 122:123 (≠ GM 130:131) binding thiamine diphosphate
C197 (= C206) binding [4Fe-4S] cluster

5b46B 2-oxoacid:ferredoxin oxidoreductase 2 from sulfolobus tokodai - ligand free form (see paper)
44% identity, 68% coverage: 21:209/276 of query aligns to 8:197/301 of 5b46B

query
sites
5b46B

W
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W

C
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C

P

P

G

G

C
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C

G

G

D

D

Y

F

S

G

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I

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L

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A

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A

M

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I

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G

C
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C

S
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S

S

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I

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N

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P

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H
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H

G

G

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R

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A

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F

A

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K

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L

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I

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G
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G

D
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D

G
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G

D
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D

G

G

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L

S

G

I

I

G

G

G

M

N

G

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F

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H

H

A

L

C

G

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R

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N

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Y

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D

N

N
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N

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V

Y
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Y

G
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G

M
x
L

T
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T

K

K

G

G

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Q

A

A

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S

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T

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T

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E

H

A

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W

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C

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K

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K

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L

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P

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K

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N

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A

A

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A

A

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L

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C

A

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G

A

Y

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F

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V

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A

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R

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G

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Y

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A

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Y

N

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L

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T

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x
Y

binding magnesium ion: D87 (= D98), N115 (= N126), V117 (= V128)
binding iron/sulfur cluster: W8 (= W21), C9 (= C22), C12 (= C25), C43 (= C56), C194 (= C206), T196 (= T208), Y197 (≠ F209)
binding thiamine diphosphate: I41 (= I54), G42 (= G55), C43 (= C56), S44 (= S57), H62 (= H73), G86 (= G97), G88 (= G99), D89 (= D100), N115 (= N126), V117 (= V128), Y118 (= Y129), G119 (= G130), L120 (≠ M131), T121 (= T132)

5b48B 2-oxoacid:ferredoxin oxidoreductase 1 from sulfolobus tokodai (see paper)
39% identity, 91% coverage: 21:271/276 of query aligns to 7:259/286 of 5b48B

query
sites
5b48B

W

W

C
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C

P

P

G

G

C
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C

G

G

D

N

Y

F

S

G

V

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L

L

A

N

G

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A

A

M

I

A

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E

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G

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D

R

T

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K

D

N

T

V

V

V

S

S

G

G

I
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I

G
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G

C
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C

S
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S

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I

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F

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H

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D

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N

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H

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D

N
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N

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V

Y
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Y

G
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G

M
x
L

T

T

K

K

G

G

Q

Q

A

A

S

S

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P

T

T

T

L

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K

A

-

D

-

W

-

C

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E

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S

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K

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L

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T

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P

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E

R

G

G

P

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G

N

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N

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P

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I

A

A

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L

A

A

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C

S

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G

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F

F

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V

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A

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C
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C

V

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T

F

Y

R

N

-

D

-

I

-

N

-

T

P

K

E

E

Q

W

R

R

N

I

W

Y

K

K

S

L

T

D

V

T

-

L

-

P

-

D

-

W

H

D

P

P

Y

V

G

V

R

K

E

K

P

P

T

E

D

E

D

V

P

N

N

E

E

K

A

I

M

K

R

R

A

A

V

I

-

D

-

K

-

S

L

L

E

E

D

W

D

G

G

D

F

I

G

P

L

I

G

G

I

I

F

F

L

Y

A

Q

G

N

N

E

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P

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Y

P

E

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A

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I

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E

D

binding magnesium ion: D84 (= D98), N112 (= N126), V114 (= V128)
binding iron/sulfur cluster: C8 (= C22), C11 (= C25), C42 (= C56), C183 (= C206), T185 (= T208)
binding 2-[(2E)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-(1-oxidanylpropylidene)-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate: I40 (= I54), G41 (= G55), C42 (= C56), S43 (= S57), H59 (= H73), G85 (= G99), D86 (= D100), N112 (= N126), V114 (= V128), Y115 (= Y129), G116 (= G130), L117 (≠ M131)

Q96Y68 2-oxoacid:ferredoxin oxidoreductase 1, subunit beta; OFOR1; EC 1.2.7.11 from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii) (see 2 papers)
38% identity, 91% coverage: 21:271/276 of query aligns to 11:277/305 of Q96Y68

query
sites
Q96Y68

W

W

C
|
C

P

P

G

G

C
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C

G

G

D

N

Y

F

S

G

V

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L

L

A

N

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A

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G

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N

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V

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S

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G

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I

G

G

C
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C

S

S

S

G

R
x
K

I

I

P

P

A

H

Y

F

-

F

-

R

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G

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L

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A

A

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F

A

A

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G

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K

L

L

A

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N

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D

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L

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G

D
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D

G
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G

D
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D

G

L

F

L

S

G

I

I

G

G

G

A

N

G

H

H

F

F

L

V

H

A

A

A

C

G

R

R

N

N

V

V

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D

M

M

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Y

V

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I

V

L

M

H

D

D

N
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N

Q

G

V
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V

Y

Y

G
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G

M
x
L

T

T

K
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K

G

G

Q

Q

A

A

S

S

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P

T

T

T

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E

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A

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W

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K

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L

A

A

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S

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G

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F

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V

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A

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R

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A

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N

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N
x
K

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L

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H

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G

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C
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C

V

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T

T

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Y

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Y

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L

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D

W

D

D

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P

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V

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K

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P

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E

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V

N

N

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E

A

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M

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K

A

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A

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E

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D

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S

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G

D

D

G

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I

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I

F

F

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A

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G

N

N

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A

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Y

I

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E

D

C12 (= C22) binding [4Fe-4S] cluster
C15 (= C25) binding [4Fe-4S] cluster
C46 (= C56) binding [4Fe-4S] cluster
K49 (≠ R59) mutation to I: Loss of oxidoreductase activity toward 2-oxoglutarate but retains its activity toward pyruvate.
D90 (= D98) binding Mg(2+)
GD 91:92 (= GD 99:100) binding thiamine diphosphate
N118 (= N126) binding Mg(2+)
V120 (= V128) binding Mg(2+)
GL 122:123 (≠ GM 130:131) binding thiamine diphosphate
K125 (= K133) Plays an important role in the binding of CoA; mutation to A: Shows a strong decrease of affinity for CoA and a poor inactivation by 4-fluoro-7-nitrobenzofurazan (NBD-F).
K173 (≠ N182) mutation to A: Same oxidoreductase activity as the wild-type.
C197 (= C206) binding [4Fe-4S] cluster

P72579 2-oxoacid:ferredoxin oxidoreductase subunit beta; OFOR; EC 1.2.7.11 from Sulfolobus sp. (see paper)
38% identity, 91% coverage: 21:271/276 of query aligns to 11:277/305 of P72579

query
sites
P72579

W

W

C

C

P

P

G

G

C

C

G

G

D

N

Y

F

S

G

V

I

L

L

A

N

G

A

I

E

T

Q

R

Q

A

A

M

I

A

V

T

E

M

L

G

G

L

V

E

D

R

T

H

K

D

N

T

V

V

V

S

S

G

G

I

I

G

G

C

C

S

S

S

G

R
x
K

I

I

P

P

A

H

Y

F

-

F

-

R

T

T

S

P

V

I

Y

S

G

G

Y

V

H

H

T

T

V

L

H

H

G

G

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S

A

L

I

A

A

V

F

A

A

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T

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G

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I

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K

L

L

A

S

R

N

P

P

E

D

L

L

N

V

V

V

L

I

I

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F

N

G

G

D

D

G

G

D

D

G

L

F

L

S

G

I

I

G

G

G

A

N

G

H

H

F

F

L

V

H

A

A

A

C

G

R

R

N

N

V

V

D

D

M

M

T

V

Y

V

I

I

V

L

M

H

D

D

N

N

Q

G

V

V

Y

Y

G

G

M
x
L

T

T

K

K

G

G

Q

Q

A

A

S

S

P

P

T

T

T

L

E

K

A

R

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W

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-

E

E

S

K

K

P

L

K

T

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L

E

P

G

R

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P

G

N

V

I

N

N

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P

A

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Q

N

P

P

V

I

A

A

L

L

A

A

L

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A

S

C

S

G

G

A

Y

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F

F

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V

A

A

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D

D

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D

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K

-

P

-

E

-

V

N

N

E

E

A

K

M

I

R

K

A

R

V

A

L

I

E

D

D

K

-

S

-

L

-

E

-

W

-

G

D

D

G

R

F

I

G

P

L

I

G

G

I

I

F

F

L

Y

A

Q

G

N

N

E

R

L

R

V

P

P

F

S

Q

Y

P

E

E

E

S

R

A

I

A

K

T

A

R

N

S

S

I

P

A

A

Q

Y

I

L

E

D

K49 (≠ R59) mutation to I: Strong decrease of the oxidoreductase activity with pyruvate, 2-oxobutyrate and 2-oxoglutarate.; mutation to R: Increase the oxidoreductase activity with pyruvate.; mutation to V: Slight decrease of the oxidoreductase activity with pyruvate, 2-oxobutyrate and 2-oxoglutarate.
L123 (≠ M131) mutation L->A,I: Strong decrease of the oxidoreductase activity with pyruvate, 2-oxobutyrate and 2-oxoglutarate.; mutation to N: Strong decrease of the oxidoreductase activity with pyruvate and 2-oxobutyrate. However, this mutant shows almost the same activity with 2-oxoglutarate as the wild-type.

5b47B 2-oxoacid:ferredoxin oxidoreductase 2 from sulfolobus tokodai - pyruvate complex (see paper)
37% identity, 86% coverage: 21:256/276 of query aligns to 4:233/275 of 5b47B

query
sites
5b47B

W

W

C
|
C

P

P

G

G

C
|
C

G

G

D

D

Y

F

S

G

V

I

L

L

A

R

G

A

I

E

T

E

R

M

A

A

M

I

A

R

T

E

M

L

G

G

L

I

E

N

R

P

H

K

D

S

T

V

V

V

V

I

V

V

S

S

G

G

I
|
I

G
|
G

C
|
C

S
|
S

S

G

R

K

I

I

P

P

A

H

Y

F

T

M

S

N

-

L

-

P

V

I

Y

S

G

G

Y

V

H

H

T

T

V

L

H
|
H

G

G

R

R

S

S

L

I

A

A

V

F

A

A

S

T

G

G

V

I

K

K

L

L

A

S

R

N

P

P

E

S

L

L

N

E

V

V

L

I

I

V

F

N

G

V

G

G

D
|
D

G
|
G

D
|
D

G

G

F

L

S

G

I

I

G

G

G

M

N

G

H

H

F

F

L

V

H

H

A

L

C

G

R

R

N

N

V

I

D

D

M

I

T

A

Y

V

I

L

V

V

M

H

D

N

N
|
N

Q

G

V
|
V

Y
|
Y

G

G

M
x
L

T

-

K

-

G

-

Q

Q

A

A

S

S

P

P

T

T

T

L

E

H

A

-

D

-

W

-

C

-

E

-

S

-

K

-

L

-

T

-

P

-

E

R

G

G

P

E

G

N

V

I

-

M

N

D

P

A

I

V

Q

N

P

P

V

L

A

A

L

V

A

A

L

L

A

A

C

A

G

G

A

Y

N

T

F

F

V

V

A

A

R

R

G

G

F

Y

S

A

N

Y

N

D

P

V

N

M

E

H

V

L

A

K

R

E

L

L

I

I

V

K

E

K

G

A

V

I

R

L

H

H

P

K

G

G

F

S

S

A

V

L

I

V

H

D

I

I

L

L

S

Q

P

P

C
|
C

V

P

T

T

F

Y

R

R

P

V

E

Y

Q

K

R

L

N

D

W

N

K

V

S

P

T

G

V

W

H

D

P

P

Y

V

G

V

R

R

E

K

P

E

T

E

D

E

D

A

P

Q

N

K

E

K

A

F

M

E

R

Q

A

A

V

I

L

M

E

K

D

S

D

Y

G

E

F

W

G

G

-

E

-

K

-

I

-

P

L

I

G

G

I

I

F

F

L

Y

A

Q

G

N

N

E

R

L

R

V

P

P

binding magnesium ion: D83 (= D98), N111 (= N126)
binding iron/sulfur cluster: C5 (= C22), C8 (= C25), C39 (= C56), C179 (= C206)
binding thiamine diphosphate: I37 (= I54), G38 (= G55), C39 (= C56), S40 (= S57), H58 (= H73), G84 (= G99), D85 (= D100), N111 (= N126), V113 (= V128), Y114 (= Y129), L116 (≠ M131)

5exdF Crystal structure of oxalate oxidoreductase from moorella thermoacetica bound with carboxy-di-oxido-methyl-tpp (coom-tpp) intermediate (see paper)
27% identity, 47% coverage: 78:206/276 of query aligns to 79:225/310 of 5exdF

query
sites
5exdF

A

A

V

V

A

A

S

S

G

G

V

I

K

E

L

A

A

A

R

Y

P

K

E

A

L

M

-

I

-

R

-

K

-

T

-

D

-

A

-

E

-

F

-

P

N

N

V

I

L

I

I

V

F

M

G

A

G

G

D
|
D

G
|
G

D

G

G

A

F

V

S

D

I

I

G

G

G

L

N

Q

H

A

F

L

L

S

H

A

A

M

C

L

R

Y

R

R

N

G

V

H

D

D

M

V

T

L

Y

F

I

I

V

C

M
x
Y

D

D

N
|
N

Q

E

V
x
S

Y
|
Y

G
x
A

M
x
N

T
|
T

K

G

G

I

Q

Q

A

T

S

S

P

P

T

T

E

P

A

Y

D

G

W

A

C

N

E

T

S

T

-

F

-

T

-

P

-

G

K

E

L

V

T

V

P

P

E

E

G

G

P

K

G

K

V

L

N

F

P

P

I

K

-

D

Q

N

P

P

V

K

A

V

L

I

A

A

L

H

A

G

C

H

-

P

G

E

A

L

N

K

F

Y

V

V

A

A

R

T

G

A

F

S

S

I

N

G

N

W

P

P

N

V

E

D

V

L

A

M

R

N

L

K

I

V

V

R

E

K

G

G

V

L

R

N

H

Q

P

E

G

G

F

P

S

A

V

Y

I

I

H

H

I

I

L

H

S

A

P

P

C
|
C

active site: N143 (≠ M131)
binding magnesium ion: D110 (= D98), N138 (= N126), S140 (≠ V128)
binding [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[1,1,2-tris(oxidanyl)-2-oxidanylidene-ethyl]-1,3-thiazol-3-ium-5-yl]ethoxy-oxidanyl-phosphoryl] hydrogen phosphate: D110 (= D98), G111 (= G99), Y136 (≠ M124), N138 (= N126), S140 (≠ V128), Y141 (= Y129), A142 (≠ G130), N143 (≠ M131), T144 (= T132)
binding iron/sulfur cluster: A142 (≠ G130), C225 (= C206)

Sites not aligning to the query:

5c4iC Structure of an oxalate oxidoreductase (see paper)
27% identity, 47% coverage: 78:206/276 of query aligns to 79:225/312 of 5c4iC

query
sites
5c4iC

A

A

V

V

A

A

S

S

G

G

V

I

K

E

L

A

A

A

R

Y

P

K

E

A

L

M

-

I

-

R

-

K

-

T

-

D

-

A

-

E

-

F

-

P

N

N

V

I

L

I

I

V

F

M

G

A

G
|
G

D
|
D

G
|
G

D

G

G

A

F

V

S

D

I

I

G

G

G

L

N

Q

H

A

F

L

L

S

H

A

A

M

C

L

R

Y

R

R

N

G

V

H

D

D

M

V

T

L

Y

F

I

I

V

C

M
x
Y

D

D

N
|
N

Q

E

V
x
S

Y
|
Y

G
x
A

M
x
N

T
|
T

K

G

G

I

Q

Q

A

T

S

S

P

P

T

T

E

P

A

Y

D

G

W

A

C

N

E

T

S

T

-

F

-

T

-

P

-

G

K

E

L

V

T

V

P

P

E

E

G

G

P

K

G

K

V

L

N

F

P

P

I

K

-

D

Q

N

P

P

V

K

A

V

L

I

A

A

L

H

A

G

C

H

-

P

G

E

A

L

N

K

F

Y

V

V

A

A

R

T

G

A

F

S

S

I

N

G

N

W

P

P

N

V

E

D

V

L

A

M

R

N

L

K

I

V

V

R

E

K

G

G

V

L

R

N

H

Q

P

E

G

G

F

P

S

A

V

Y

I

I

H

H

I

I

L

H

S

A

P

P

C
|
C

active site: N143 (≠ M131)
binding magnesium ion: D110 (= D98), N138 (= N126), S140 (≠ V128)
binding iron/sulfur cluster: A142 (≠ G130), C225 (= C206)
binding thiamine diphosphate: G109 (= G97), D110 (= D98), G111 (= G99), Y136 (≠ M124), N138 (= N126), S140 (≠ V128), Y141 (= Y129), A142 (≠ G130), N143 (≠ M131), T144 (= T132)

Sites not aligning to the query:

binding iron/sulfur cluster: 24, 27, 29, 52, 226, 227
binding thiamine diphosphate: 50, 51, 52, 74

5exeC Crystal structure of oxalate oxidoreductase from moorella thermoacetica bound with carboxy-tpp adduct (see paper)
27% identity, 47% coverage: 78:206/276 of query aligns to 79:225/314 of 5exeC

query
sites
5exeC

A

A

V

V

A

A

S

S

G

G

V

I

K

E

L

A

A

A

R

Y

P

K

E

A

L

M

-

I

-

R

-

K

-

T

-

D

-

A

-

E

-

F

-

P

N

N

V

I

L

I

I

V

F

M

G

A

G
|
G

D
|
D

G
|
G

D

G

G

A

F

V

S

D

I

I

G

G

G

L

N

Q

H

A

F

L

L

S

H

A

A

M

C

L

R

Y

R

R

N

G

V

H

D
|
D

M

V

T

L

Y

F

I

I

V

C

M
x
Y

D

D

N
|
N

Q

E

V
x
S

Y
|
Y

G
x
A

M
x
N

T
|
T

K

G

G

I

Q

Q

A

T

S

S

P

P

T

T

E

P

A

Y

D

G

W

A

C

N

E

T

S

T

-

F

-

T

-

P

-

G

K

E

L

V

T

V

P

P

E

E

G

G

P

K

G

K

V

L

N

F

P

P

I

K

-

D

Q

N

P

P

V

K

A

V

L

I

A

A

L

H

A

G

C

H

-

P

G

E

A

L

N

K

F

Y

V

V

A

A

R

T

G

A

F

S

S

I

N

G

N

W

P

P

N

V

E

D

V

L

A

M

R

N

L

K

I

V

V

R

E

K

G

G

V
x
L

R

N

H
x
Q

P

E

G

G

F

P

S

A

V

Y

I

I

H

H

I

I

L

H

S

A

P

P

C
|
C

active site: N143 (≠ M131)
binding [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-carboxy-4-methyl-1,3-thiazol-3-ium-5-yl]ethoxy-oxidanyl-phosphoryl] hydrogen phosphate: G109 (= G97), D110 (= D98), G111 (= G99), Y136 (≠ M124), N138 (= N126), S140 (≠ V128), Y141 (= Y129), A142 (≠ G130), N143 (≠ M131), T144 (= T132)
binding magnesium ion: D110 (= D98), D130 (= D118), N138 (= N126), S140 (≠ V128), L211 (≠ V192), Q213 (≠ H194)
binding iron/sulfur cluster: C225 (= C206)

Sites not aligning to the query:

6cipA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with acetyl-tpp bound (see paper)
24% identity, 42% coverage: 91:207/276 of query aligns to 959:1075/1165 of 6cipA

query
sites
6cipA

N

S

V

I

L

W

I

I

F

I

G

G

G
|
G

D
|
D

G
|
G

D

W

G

A

F

Y

S

D

I

I

G

G

G

Y

N

G

H

G

F

L

L

D

H

H

A

V

C

L

R

A

R

S

N

G

V

A

D

N

M

V

T

N

Y

V

I

L

V

V

M

L

D

D

N
x
T

Q

E

V
|
V

Y

Y

G
x
S

M
x
N

T

T

K

G

G

G

Q

Q

A

S

S

S

P

K

T

A

T

T

E

Q

A

T

D

G

W

A

C

V

E

-

S

A

K

R

L

F

T

A

P

A

E

G

G

G

P

K

G

F

V

T

N

K

P

K

I

K

Q

D

P

L

V

G

A

L

L

M

A

A

L

M

A

S

C

Y

G

G

A

Y

N

V

F

Y

V

V

A

A

R

S

-

V

G

A

F

M

S

G

N

A

N

S

P

H

N

S

E

Q

V

L

A

M

R

K

L

A

I

L

V

I

E

E

G

A

V

E

R

K

H

Y

P

D

G

G

F

P

S

S

V

L

I

I

H

I

I

A

L

Y

S

A

P

P

C
|
C

V

I

active site: N999 (≠ M131)
binding 2-acetyl-thiamine diphosphate: G965 (= G97), D966 (= D98), G967 (= G99), V996 (= V128), S998 (≠ G130), N999 (≠ M131)
binding magnesium ion: D966 (= D98), T994 (≠ N126), V996 (= V128)
binding iron/sulfur cluster: S998 (≠ G130), C1074 (= C206)

Sites not aligning to the query:

active site: 28, 61, 111
binding 2-acetyl-thiamine diphosphate: 27, 61, 85, 111, 813, 834, 835, 836, 865
binding iron/sulfur cluster: 455, 678, 680, 685, 686, 688, 689, 691, 695, 699, 700, 734, 741, 742, 744, 745, 747, 751, 757, 758, 807, 808, 811, 813, 836

6ciqA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with coenzyme a bound (see paper)
24% identity, 42% coverage: 91:207/276 of query aligns to 959:1075/1169 of 6ciqA

query
sites
6ciqA

N

S

V

I

L

W

I

I

F

I

G

G

G
|
G

D
|
D

G
|
G

D

W

G

A

F

Y

S

D

I

I

G

G

G

Y

N

G

H

G

F

L

L

D

H

H

A

V

C

L

R

A

R

S

N

G

V

A

D

N

M

V

T

N

Y

V

I

L

V

V

M

L

D

D

N
x
T

Q

E

V
|
V

Y
|
Y

G
x
S

M
x
N

T
|
T

K

G

G

G

Q

Q

A

S

S

S

P

K

T

A

T

T

E

Q

A

T

D

G

W

A

C

V

E

-

S

A

K

R

L

F

T

A

P

A

E

G

G

G

P

K

G

F

V

T

N

K

P

K

I

K

Q

D

P

L

V

G

A

L

L

M

A

A

L

M

A

S

C

Y

G

G

A

Y

N

V

F

Y

V

V

A

A

R

S

-

V

G

A

F

M

S

G

N

A

N

S

P

H

N

S

E

Q

V

L

A

M

R

K

L

A

I

L

V

I

E

E

G

A

V

E

R

K

H

Y

P

D

G

G

F

P

S

S

V

L

I

I

H

I

I

A

L

Y

S

A

P

P

C
|
C

V
x
I

active site: N999 (≠ M131)
binding coenzyme a: N999 (≠ M131)
binding magnesium ion: D966 (= D98), T994 (≠ N126), V996 (= V128)
binding iron/sulfur cluster: S998 (≠ G130), C1074 (= C206), I1075 (≠ V207)
binding thiamine diphosphate: G965 (= G97), D966 (= D98), G967 (= G99), V996 (= V128), Y997 (= Y129), S998 (≠ G130), N999 (≠ M131), T1000 (= T132)

Sites not aligning to the query:

active site: 28, 61, 111
binding coenzyme a: 28, 423, 424, 427, 428, 553, 586
binding iron/sulfur cluster: 678, 680, 685, 686, 688, 689, 691, 695, 696, 700, 734, 741, 742, 743, 744, 745, 747, 751, 757, 807, 808, 811, 813, 836
binding thiamine diphosphate: 26, 27, 61, 85, 813, 835, 836, 865

6cinB Crystal structure of pyruvate:ferredoxin oxidoreductase from moorella thermoacetica (see paper)
24% identity, 42% coverage: 91:207/276 of query aligns to 959:1075/1169 of 6cinB

query
sites
6cinB

N

S

V

I

L

W

I

I

F

I

G

G

G
|
G

D
|
D

G
|
G

D

W

G

A

F

Y

S

D

I

I

G

G

G

Y

N

G

H

G

F

L

L

D

H

H

A

V

C

L

R

A

R

S

N

G

V

A

D

N

M

V

T

N

Y

V

I

L

V

V

M

L

D

D

N
x
T

Q

E

V
|
V

Y
|
Y

G
x
S

M
x
N

T
|
T

K

G

G

G

Q

Q

A

S

S

S

P

K

T

A

T

T

E

Q

A

T

D

G

W

A

C

V

E

-

S

A

K

R

L

F

T

A

P

A

E

G

G

G

P

K

G

F

V

T

N

K

P

K

I

K

Q

D

P

L

V

G

A

L

L

M

A

A

L

M

A

S

C

Y

G

G

A

Y

N

V

F

Y

V

V

A

A

R

S

-

V

G

A

F

M

S

G

N

A

N

S

P

H

N

S

E

Q

V

L

A

M

R

K

L

A

I

L

V

I

E

E

G

A

V

E

R

K

H

Y

P

D

G

G

F

P

S

S

V

L

I

I

H

I

I

A

L

Y

S

A

P

P

C
|
C

V
x
I

active site: N999 (≠ M131)
binding magnesium ion: D966 (= D98), T994 (≠ N126), V996 (= V128)
binding iron/sulfur cluster: S998 (≠ G130), C1074 (= C206), I1075 (≠ V207)
binding thiamine diphosphate: G965 (= G97), D966 (= D98), G967 (= G99), V996 (= V128), Y997 (= Y129), S998 (≠ G130), N999 (≠ M131), T1000 (= T132)

Sites not aligning to the query:

active site: 28, 61, 111
binding iron/sulfur cluster: 455, 678, 685, 686, 687, 688, 689, 691, 695, 700, 741, 742, 743, 744, 745, 746, 747, 751, 752, 757, 758, 807, 808, 811, 813, 836
binding thiamine diphosphate: 26, 27, 61, 834, 835, 836, 865

6cioA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with lactyl-tpp bound (see paper)
24% identity, 42% coverage: 91:207/276 of query aligns to 959:1075/1164 of 6cioA

query
sites
6cioA

N

S

V

I

L

W

I

I

F

I

G

G

G
|
G

D
|
D

G
|
G

D

W

G

A

F

Y

S

D

I

I

G

G

G

Y

N

G

H

G

F

L

L

D

H

H

A

V

C

L

R

A

R

S

N

G

V

A

D

N

M

V

T

N

Y

V

I

L

V

V

M

L

D

D

N
x
T

Q

E

V
|
V

Y
|
Y

G
x
S

M
x
N

T
|
T

K

G

G

G

Q

Q

A

S

S

S

P

K

T

A

T

T

E

Q

A

T

D

G

W

A

C

V

E

-

S

A

K

R

L

F

T

A

P

A

E

G

G

G

P

K

G

F

V

T

N

K

P

K

I

K

Q

D

P

L

V

G

A

L

L

M

A

A

L

M

A

S

C

Y

G

G

A

Y

N

V

F

Y

V

V

A

A

R

S

-

V

G

A

F

M

S

G

N

A

N

S

P

H

N

S

E

Q

V

L

A

M

R

K

L

A

I

L

V

I

E

E

G

A

V

E

R

K

H

Y

P

D

G

G

F

P

S

S

V

L

I

I

H

I

I

A

L

Y

S

A

P

P

C
|
C

V
x
I

active site: N999 (≠ M131)
binding magnesium ion: D966 (= D98), T994 (≠ N126), V996 (= V128)
binding iron/sulfur cluster: C1074 (= C206), I1075 (≠ V207)
binding 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(1-carboxy-1-hydroxyethyl)-5-(2-{[hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium: G965 (= G97), D966 (= D98), G967 (= G99), V996 (= V128), Y997 (= Y129), S998 (≠ G130), N999 (≠ M131), T1000 (= T132)

Sites not aligning to the query:

active site: 28, 61, 111
binding iron/sulfur cluster: 455, 678, 680, 685, 686, 688, 689, 691, 695, 699, 700, 734, 741, 742, 744, 745, 747, 751, 757, 758, 807, 808, 811, 813, 836
binding 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(1-carboxy-1-hydroxyethyl)-5-(2-{[hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium: 26, 27, 28, 61, 85, 111, 813, 834, 835, 836, 865

Q2RMD6 Pyruvate:ferredoxin oxidoreductase; PFOR; Pyruvate synthase; EC 1.2.7.1 from Moorella thermoacetica (strain ATCC 39073 / JCM 9320) (see paper)
24% identity, 42% coverage: 91:207/276 of query aligns to 960:1076/1171 of Q2RMD6

query
sites
Q2RMD6

N

S

V

I

L

W

I

I

F

I

G

G

D
|
D

G
|
G

D
x
W

G

A

F

Y

S

D

I

I

G

G

G

Y

N

G

H

G

F

L

L

D

H

H

A

V

C

L

R

A

R

S

N

G

V

A

D

N

M

V

T

N

Y

V

I

L

V

V

M

L

D

D

N
x
T

Q
x
E

V
|
V

Y
|
Y

G
x
S

M
x
N

T

T

K

G

G

G

Q

Q

A

S

S

S

P

K

T

A

T

T

E

Q

A

T

D

G

W

A

C

V

E

-

S

A

K

R

L

F

T

A

P

A

E

G

G

G

P

K

G

F

V

T

N

K

P

K

I

K

Q

D

P

L

V

G

A

L

L

M

A

A

L

M

A

S

C

Y

G

G

A

Y

N

V

F

Y

V

V

A

A

R

S

-

V

G

A

F

M

S

G

N

A

N

S

P

H

N

S

E

Q

V

L

A

M

R

K

L

A

I

L

V

I

E

E

G

A

V

E

R

K

H

Y

P

D

G

G

F

P

S

S

V

L

I

I

H

I

I

A

L

Y

S

A

P

P

C
|
C

V

I

D967 (= D98) binding Mg(2+)
DGW 967:969 (≠ DGD 98:100) binding thiamine diphosphate
T995 (≠ N126) binding Mg(2+)
TEVYSN 995:1000 (≠ NQVYGM 126:131) binding thiamine diphosphate
V997 (= V128) binding Mg(2+)
C1075 (= C206) binding [4Fe-4S] cluster

Sites not aligning to the query:

424:428 binding CoA
456 binding CoA
556 binding CoA
598 binding CoA
686 binding [4Fe-4S] cluster
689 binding [4Fe-4S] cluster
692 binding [4Fe-4S] cluster
696 binding [4Fe-4S] cluster
742 binding [4Fe-4S] cluster
745 binding [4Fe-4S] cluster
748 binding [4Fe-4S] cluster
752 binding [4Fe-4S] cluster
809 binding [4Fe-4S] cluster
812 binding [4Fe-4S] cluster
814 binding thiamine diphosphate
837 binding [4Fe-4S] cluster; binding thiamine diphosphate

2c3uA Crystal structure of pyruvate-ferredoxin oxidoreductase from desulfovibrio africanus, oxygen inhibited form (see paper)
28% identity, 42% coverage: 91:207/276 of query aligns to 955:1071/1231 of 2c3uA

query
sites
2c3uA

N

S

V

V

L

W

I

I

F

F

G

G

G
|
G

D
|
D

G
|
G

D
x
W

G

A

F

Y

S

D

I

I

G

G

G

Y

N

G

H

G

F

L

L

D

H

H

A

V

C

L

R

A

R

S

N

G

V

E

D
|
D

M

V

T
x
N

Y

V

I

F

V

V

M

M

D

D

N
x
T

Q

E

V
|
V

Y
|
Y

G
x
S

M
x
N

T
|
T

K

G

G

G

Q

Q

A

S

S

S

P

K

T

A

T

T

E

P

A

T

D

G

W

A

C

V

E

-

S

A

K

K

L

F

T

A

P

A

E

A

G

G

P

K

G

R

V

T

N

G

P

K

I

K

Q

D

P

L

V

A

A

R

L

M

A

V

L

M

A

T

C

Y

G

G

A

Y

N

V

F

Y

V

V

A

A

-

T

-

V

-

S

R

M

G

G

F

Y

S

S

N

K

N

-

P

-

N

Q

E

Q

V

F

A

L

R

K

L

V

I

L

V

K

E

E

G
x
A

V
x
E

R

S

H
x
F

P

P

G
|
G

F

P

S
|
S

V

L

I

V

H

I

I

A

L

Y

S

A

P

T

C
|
C

V
x
I

active site: N995 (≠ M131)
binding 2-(3-{[4-(hydroxyamino)-2-methylpyrimidin-5-yl]methyl}-4-methyl-2,3-dihydro-1,3-thiazol-5-yl)ethyl trihydrogen diphosphate: G961 (= G97), D962 (= D98), G963 (= G99), W964 (≠ D100), V992 (= V128), Y993 (= Y129), S994 (≠ G130), N995 (≠ M131), T996 (= T132)
binding calcium ion: D982 (= D118), N984 (≠ T120), A1055 (≠ G191), E1056 (≠ V192), F1058 (≠ H194), G1060 (= G196), S1062 (= S198)
binding magnesium ion: D962 (= D98), T990 (≠ N126), V992 (= V128)
binding pyruvic acid: N995 (≠ M131)
binding iron/sulfur cluster: C1070 (= C206), I1071 (≠ V207)

Sites not aligning to the query:

active site: 30, 63, 113
binding 2-(3-{[4-(hydroxyamino)-2-methylpyrimidin-5-yl]methyl}-4-methyl-2,3-dihydro-1,3-thiazol-5-yl)ethyl trihydrogen diphosphate: 28, 29, 63, 87, 816, 837, 839, 868, 869
binding pyruvic acid: 30, 113, 122
binding iron/sulfur cluster: 458, 681, 683, 688, 689, 691, 692, 694, 698, 699, 702, 703, 744, 745, 746, 747, 748, 750, 754, 755, 760, 761, 811, 814, 816, 839

2c3pA Crystal structure of the free radical intermediate of pyruvate:ferredoxin oxidoreductase from desulfovibrio africanus (see paper)
28% identity, 42% coverage: 91:207/276 of query aligns to 955:1071/1231 of 2c3pA

query
sites
2c3pA

N

S

V

V

L

W

I

I

F

F

G

G

G
|
G

D
|
D

G
|
G

D

W

G

A

F

Y

S

D

I

I

G

G

G

Y

N

G

H

G

F

L

L

D

H

H

A

V

C

L

R

A

R

S

N

G

V

E

D
|
D

M
x
V

T
x
N

Y

V

I

F

V

V

M

M

D

D

N
x
T

Q

E

V
|
V

Y
|
Y

G
x
S

M
x
N

T
|
T

K

G

G

G

Q

Q

A

S

S

S

P

K

T

A

T

T

E

P

A

T

D

G

W

A

C

V

E

-

S

A

K

K

L

F

T

A

P

A

E

A

G

G

P

K

G

R

V

T

N

G

P

K

I

K

Q

D

P

L

V

A

A

R

L

M

A

V

L

M

A

T

C

Y

G

G

A

Y

N

V

F

Y

V

V

A

A

-

T

-

V

-

S

R

M

G

G

F

Y

S

S

N

K

N

-

P

-

N

Q

E

Q

V

F

A

L

R

K

L

V

I

L

V

K

E

E

G
x
A

V
x
E

R

S

H
x
F

P

P

G
|
G

F

P

S
|
S

V

L

I

V

H

I

I

A

L

Y

S

A

P

T

C
|
C

V
x
I

active site: N995 (≠ M131)
binding 1-(2-{(2s,4r,5r)-3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1s)-1-carboxy-1-hydroxyethyl]-4-methyl-1,3-thiazolidin-5-yl}ethoxy)-1,1,3,3-tetrahydroxy-1lambda~5~-diphosphox-1-en-2-ium 3-oxide: G961 (= G97), D962 (= D98), G963 (= G99), V992 (= V128), Y993 (= Y129), S994 (≠ G130), N995 (≠ M131), T996 (= T132)
binding calcium ion: D982 (= D118), V983 (≠ M119), N984 (≠ T120), A1055 (≠ G191), E1056 (≠ V192), F1058 (≠ H194), G1060 (= G196), S1062 (= S198)
binding magnesium ion: D962 (= D98), T990 (≠ N126), V992 (= V128)
binding iron/sulfur cluster: S994 (≠ G130), C1070 (= C206), I1071 (≠ V207)

Sites not aligning to the query:

active site: 30, 63, 113
binding 1-(2-{(2s,4r,5r)-3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1s)-1-carboxy-1-hydroxyethyl]-4-methyl-1,3-thiazolidin-5-yl}ethoxy)-1,1,3,3-tetrahydroxy-1lambda~5~-diphosphox-1-en-2-ium 3-oxide: 28, 29, 30, 63, 87, 113, 816, 837, 838, 839, 868, 869
binding iron/sulfur cluster: 458, 681, 683, 688, 689, 690, 691, 692, 694, 698, 699, 702, 703, 744, 745, 746, 747, 748, 750, 754, 755, 760, 761, 810, 811, 814, 816, 839

2c3oA Crystal structure of the free radical intermediate of pyruvate:ferredoxin oxidoreductase from desulfovibrio africanus (see paper)
28% identity, 42% coverage: 91:207/276 of query aligns to 955:1071/1231 of 2c3oA

query
sites
2c3oA

N

S

V

V

L

W

I

I

F

F

G

G

G
|
G

D
|
D

G
|
G

D

W

G

A

F

Y

S

D

I

I

G

G

G

Y

N

G

H

G

F

L

L

D

H

H

A

V

C

L

R

A

R

S

N

G

V

E

D
|
D

M

V

T
x
N

Y

V

I

F

V

V

M

M

D

D

N
x
T

Q

E

V
|
V

Y
|
Y

G
x
S

M
x
N

T
|
T

K

G

G

G

Q

Q

A

S

S

S

P

K

T

A

T

T

E

P

A

T

D

G

W

A

C

V

E

-

S

A

K

K

L

F

T

A

P

A

E

A

G

G

P

K

G

R

V

T

N

G

P

K

I

K

Q

D

P

L

V

A

A

R

L

M

A

V

L

M

A

T

C

Y

G

G

A

Y

N

V

F

Y

V

V

A

A

-

T

-

V

-

S

R

M

G

G

F

Y

S

S

N

K

N

-

P

-

N

Q

E

Q

V

F

A

L

R

K

L

V

I

L

V

K

E

E

G

A

V
x
E

R

S

H
x
F

P

P

G
|
G

F

P

S

S

V

L

I

V

H

I

I

A

L

Y

S

A

P

T

C
|
C

V
x
I

active site: N995 (≠ M131)
binding calcium ion: D982 (= D118), N984 (≠ T120), E1056 (≠ V192), F1058 (≠ H194), G1060 (= G196)
binding magnesium ion: D962 (= D98), T990 (≠ N126), V992 (= V128)
binding pyruvic acid: T996 (= T132)
binding iron/sulfur cluster: C1070 (= C206), I1071 (≠ V207)
binding thiamine diphosphate: G961 (= G97), D962 (= D98), G963 (= G99), V992 (= V128), Y993 (= Y129), S994 (≠ G130), N995 (≠ M131), T996 (= T132)

Sites not aligning to the query:

active site: 30, 63, 113
binding pyruvic acid: 30, 113
binding iron/sulfur cluster: 458, 681, 688, 689, 691, 692, 694, 698, 699, 702, 703, 744, 746, 747, 748, 749, 750, 754, 760, 761, 810, 811, 814, 816, 839
binding thiamine diphosphate: 28, 29, 63, 87, 816, 837, 838, 839, 868

Query Sequence

>AZOBR_RS02380 FitnessBrowser__azobra:AZOBR_RS02380
LTDDVVGPLPGDYKSDVKPIWCPGCGDYSVLAGITRAMATMGLERHDTVVVSGIGCSSRI
PAYTSVYGYHTVHGRSLAVASGVKLARPELNVLIFGGDGDGFSIGGNHFLHACRRNVDMT
YIVMDNQVYGMTKGQASPTTEADWCESKLTPEGPGVNPIQPVALALACGANFVARGFSNN
PNEVARLIVEGVRHPGFSVIHILSPCVTFRPEQRNWKSTVHPYGREPTDDPNEAMRAVLE
DDGFGLGIFLAGNRRPFQPESAATRSIAQIEEGFAV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory