SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS08115 FitnessBrowser__azobra:AZOBR_RS08115 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2q7sB Crystal structure of n-formylglutamate amidohydrolase (yp_297560.1) from ralstonia eutropha jmp134 at 2.00 a resolution
30% identity, 90% coverage: 12:259/275 of query aligns to 15:269/280 of 2q7sB

query
sites
2q7sB
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L
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C
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A
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G
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L
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A
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A
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Y
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R
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M
P
 
L
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D
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D
D
 
I
L
 
D
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A
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E
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G
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P
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T
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P
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L
C
 
A
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P
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G
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E
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T
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Y
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Q
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E
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T

Query Sequence

>AZOBR_RS08115 FitnessBrowser__azobra:AZOBR_RS08115
METFRFQPGETPVLLSIPHVGTVVPPDIAATMTDSALAMPDTDWHLDRLYHFAPALGIGF
LKPILSRYVIDLNRDPDSDLPIPGGASSTELCPLTTFDHQPVYRPGQEPDAVEVRRRIGA
YWRPYHEQLNGELQALKERFGVAVLFDAHSIRSRVPRFFDGQIQDFSLGTAEGTSASPAL
VGRVMNVLTATGRFSSVQNGRFKGGFITRRYGNPADNIHSIQLELSQLTYMDEEAPFGFR
EESARQVRPTLERLLSLVVEWAWENAAGRRRSAFL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory