SitesBLAST
Comparing AZOBR_RS08555 FitnessBrowser__azobra:AZOBR_RS08555 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1ffuC Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava which lacks the mo-pyranopterin moiety of the molybdenum cofactor (see paper)
41% identity, 77% coverage: 4:207/264 of query aligns to 6:222/287 of 1ffuC
- binding flavin-adenine dinucleotide: K29 (= K26), L30 (= L27), A32 (≠ G29), G33 (= G30), G34 (= G31), H35 (≠ Q32), S36 (≠ T33), L37 (= L34), I54 (≠ L51), I101 (= I98), A102 (≠ G99), G110 (= G107), T111 (= T108), G114 (= G111), D115 (≠ S112), A117 (≠ C114), N123 (≠ A120), D124 (= D121), L161 (= L154), V166 (≠ I159), M167 (≠ V160), W193 (≠ Y183)
4zohB Crystal structure of glyceraldehyde oxidoreductase (see paper)
34% identity, 98% coverage: 1:260/264 of query aligns to 1:269/274 of 4zohB
- active site: Y256 (= Y247)
- binding flavin-adenine dinucleotide: R28 (≠ K26), P29 (≠ L27), A31 (≠ G29), G32 (= G30), G33 (= G31), H34 (≠ Q32), S35 (≠ T33), L36 (= L34), H77 (= H75), I95 (= I98), G96 (= G99), V100 (= V103), T105 (= T108), G108 (= G111), S109 (= S112), S111 (≠ C114), A117 (= A120), D118 (= D121), L160 (≠ I159), V161 (= V160), D185 (≠ R182), F186 (≠ Y183)
P19920 Carbon monoxide dehydrogenase medium chain; CO dehydrogenase subunit M; CO-DH M; EC 1.2.5.3 from Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) (Oligotropha carboxidovorans) (see 2 papers)
36% identity, 98% coverage: 3:261/264 of query aligns to 5:280/288 of P19920
1n5wC Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
36% identity, 98% coverage: 3:261/264 of query aligns to 5:280/287 of 1n5wC
7dqxE Crystal structure of xanthine dehydrogenase family protein
33% identity, 98% coverage: 3:260/264 of query aligns to 5:280/293 of 7dqxE
- binding flavin-adenine dinucleotide: K29 (= K26), I30 (≠ L27), I31 (≠ L28), G33 (= G30), G34 (= G31), Q35 (= Q32), S36 (≠ T33), L37 (= L34), H78 (= H75), I101 (= I98), A102 (≠ G99), I106 (≠ V103), G110 (= G107), T111 (= T108), G113 (= G110), G114 (= G111), S115 (= S112), A117 (≠ C114), A123 (= A120), E124 (≠ D121), I167 (≠ V160), Y193 (= Y183)
8uemB The cryoem structure of the high affinity carbon monoxide dehydrogenase from mycobacterium smegmatis (see paper)
34% identity, 97% coverage: 4:260/264 of query aligns to 7:280/289 of 8uemB
- binding flavin-adenine dinucleotide: R30 (≠ K26), I31 (≠ L27), V32 (≠ L28), A33 (≠ G29), G34 (= G30), G35 (= G31), H36 (≠ Q32), S37 (≠ T33), L38 (= L34), H80 (= H75), A104 (≠ G99), G112 (= G107), T113 (= T108), G116 (= G111), S117 (= S112), C119 (= C114), E125 (≠ A120), D126 (= D121), M168 (≠ I159), L169 (≠ V160), K186 (= K175), G192 (≠ S181), W194 (≠ Y183)
1t3qC Crystal structure of quinoline 2-oxidoreductase from pseudomonas putida 86 (see paper)
32% identity, 98% coverage: 3:260/264 of query aligns to 5:276/285 of 1t3qC
- binding flavin-adenine dinucleotide: I29 (≠ L27), A31 (≠ G29), G32 (= G30), G33 (= G31), Q34 (= Q32), S35 (≠ T33), L36 (= L34), V100 (≠ I98), A101 (≠ G99), V105 (= V103), T110 (= T108), G113 (= G111), S114 (= S112), A116 (≠ C114), A122 (= A120), E123 (≠ D121), L166 (≠ V160), Y190 (= Y183)
Q0QLF4 Nicotinate dehydrogenase FAD-subunit; NDH; Nicotinic acid hydroxylase FAD-subunit; NAH; EC 1.17.1.5 from Eubacterium barkeri (Clostridium barkeri) (see paper)
30% identity, 79% coverage: 1:209/264 of query aligns to 1:215/296 of Q0QLF4
- 29:36 (vs. 27:34, 38% identical) binding FAD
- G101 (= G99) binding FAD
- TIGGN 110:114 (≠ TLGGS 108:112) binding FAD
- D123 (= D121) binding FAD
- R160 (≠ E151) binding FAD
- M169 (≠ V160) binding FAD
- K187 (≠ N178) binding FAD
3hrdG Crystal structure of nicotinate dehydrogenase (see paper)
30% identity, 79% coverage: 1:209/264 of query aligns to 1:215/292 of 3hrdG
- binding flavin-adenine dinucleotide: I29 (≠ L27), A31 (≠ G29), G32 (= G30), G33 (= G31), T34 (≠ Q32), D35 (≠ T33), F77 (≠ H75), V100 (≠ I98), G101 (= G99), I105 (≠ V103), T110 (= T108), G113 (= G111), N114 (≠ S112), S116 (≠ C114), T117 (≠ N115), G122 (≠ A120), D123 (= D121), I168 (= I159), M169 (≠ V160)
1jroA Crystal structure of xanthine dehydrogenase from rhodobacter capsulatus (see paper)
31% identity, 83% coverage: 42:260/264 of query aligns to 213:435/450 of 1jroA
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 42, 43, 189, 191, 192, 193, 194, 195, 196
- binding fe2/s2 (inorganic) cluster: 37, 38, 39, 40, 42, 44, 45, 47, 63, 103, 106, 134, 136
2w54A Crystal structure of xanthine dehydrogenase from rhodobacter capsulatus in complex with bound inhibitor pterin-6-aldehyde (see paper)
31% identity, 83% coverage: 42:260/264 of query aligns to 213:435/450 of 2w54A
- binding flavin-adenine dinucleotide: L213 (= L42), F258 (≠ I98), A259 (≠ G99), A267 (≠ G107), T268 (= T108), G271 (= G111), N272 (≠ S112), A274 (≠ C114), N275 (= N115), G280 (≠ A120), D281 (= D121), R318 (≠ L154), V324 (= V160), Q347 (vs. gap)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 42, 189, 191, 192, 193, 194, 195, 196, 199
- binding fe2/s2 (inorganic) cluster: 38, 39, 40, 42, 44, 45, 47, 63, 103, 104, 106, 134, 135, 136
- binding {[(5aR,8R,9aR)-2-amino-4-oxo-6,7-di(sulfanyl-kappaS)-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridin-8-yl]methyl dihydrogenato(2-) phosphate}(hydroxy)oxo(thioxo)molybdenum: 102, 136
5g5gB Escherichia coli periplasmic aldehyde oxidase (see paper)
28% identity, 98% coverage: 1:260/264 of query aligns to 1:307/316 of 5g5gB
- binding flavin-adenine dinucleotide: K26 (= K26), F27 (≠ L27), A29 (≠ G29), G30 (= G30), G31 (= G31), T32 (≠ Q32), N33 (≠ T33), L34 (= L34), G98 (≠ I98), A99 (≠ G99), L103 (≠ V103), A107 (≠ G107), T108 (= T108), A110 (≠ G110), G111 (= G111), N112 (≠ S112), L114 (vs. gap), Q115 (vs. gap), S163 (≠ A120), D164 (= D121), L212 (≠ I159), I213 (≠ V160), F239 (≠ I185)
- binding iron/sulfur cluster: C119 (vs. gap), C129 (vs. gap), N130 (vs. gap), K131 (vs. gap), C138 (vs. gap), H148 (vs. gap), C157 (= C114), I158 (≠ N115), A159 (= A116)
P77324 Aldehyde oxidoreductase FAD-binding subunit PaoB; EC 1.2.99.6 from Escherichia coli (strain K12) (see paper)
28% identity, 98% coverage: 1:260/264 of query aligns to 1:307/318 of P77324
- 26:34 (vs. 26:34, 44% identical) binding FAD
- T108 (= T108) binding FAD
- C119 (vs. gap) binding [4Fe-4S] cluster
- C129 (vs. gap) binding [4Fe-4S] cluster
- C138 (vs. gap) binding [4Fe-4S] cluster
- C157 (= C114) binding [4Fe-4S] cluster
- D164 (= D121) binding FAD
- I213 (≠ V160) binding FAD
- K230 (= K175) binding FAD
1rm6B Structure of 4-hydroxybenzoyl-coa reductase from thauera aromatica (see paper)
39% identity, 42% coverage: 4:115/264 of query aligns to 7:118/323 of 1rm6B
- binding flavin-adenine dinucleotide: P29 (= P25), G31 (= G29), A32 (≠ G30), G33 (= G31), T34 (≠ Q32), D35 (≠ T33), L36 (= L34), L53 (= L51), V101 (≠ I98), A102 (≠ G99), A110 (≠ G107), T111 (= T108), G114 (= G111), N115 (≠ S112), C117 (= C114), Q118 (≠ N115)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 162, 207, 231, 232, 233
- binding iron/sulfur cluster: 122, 124, 138, 146, 147, 148, 155, 156, 157
O33820 4-hydroxybenzoyl-CoA reductase subunit beta; 4-HBCR subunit beta; EC 1.1.7.1 from Thauera aromatica (see paper)
39% identity, 42% coverage: 4:115/264 of query aligns to 7:118/324 of O33820
- 29:36 (vs. 25:34, 50% identical) binding FAD
- T111 (= T108) binding FAD
- N115 (≠ S112) binding FAD
- Q118 (≠ N115) binding FAD
Sites not aligning to the query:
- 162 binding FAD
- 224 binding FAD
Q8GUQ8 Xanthine dehydrogenase 1; AtXDH1; EC 1.17.1.4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
24% identity, 79% coverage: 5:212/264 of query aligns to 263:481/1361 of Q8GUQ8
- W364 (≠ G97) mutation to A: Decreases activity 8-fold.
- Y421 (≠ M149) mutation to A: Decreases activity 4-fold.
Sites not aligning to the query:
- 831 E→A: Loss of activity.
- 909 R→A: Decreases activity 12-fold.
- 1297 E→A: Decreases activity 40-fold.
5y6qB Crystal structure of an aldehyde oxidase from methylobacillus sp. Ky4400 (see paper)
25% identity, 100% coverage: 1:264/264 of query aligns to 1:327/330 of 5y6qB
- binding flavin-adenine dinucleotide: I26 (≠ L27), A28 (≠ G29), G29 (= G30), G30 (= G31), T31 (≠ Q32), T32 (= T33), Q33 (≠ L34), A97 (≠ I98), A98 (≠ G99), I102 (≠ V103), A106 (≠ G107), T107 (= T108), G110 (= G111), N111 (≠ S112), R113 (vs. gap), Q114 (vs. gap), G164 (vs. gap), D165 (= D121), I213 (= I159), I214 (≠ V160), K232 (= K175), F241 (≠ A184)
- binding iron/sulfur cluster: C118 (vs. gap), Y121 (vs. gap), C130 (= C114), N131 (= N115), C139 (vs. gap), A141 (vs. gap), C158 (vs. gap), I159 (vs. gap), A160 (vs. gap)
Q06278 Aldehyde oxidase; Aldehyde oxidase 1; Azaheterocycle hydroxylase; EC 1.2.3.1; EC 1.17.3.- from Homo sapiens (Human) (see 3 papers)
24% identity, 79% coverage: 6:213/264 of query aligns to 243:475/1338 of Q06278
- 264:271 (vs. 27:34, 13% identical) binding FAD
- A345 (≠ G99) binding FAD
- S354 (≠ T108) binding FAD
- H358 (≠ S112) binding FAD
- D367 (= D121) binding FAD
- L411 (≠ V160) binding FAD
Sites not aligning to the query:
- 44 binding [2Fe-2S] cluster; C→W: Disrupts protein stability.
- 49 binding [2Fe-2S] cluster
- 52 binding [2Fe-2S] cluster
- 74 binding [2Fe-2S] cluster
- 113 binding Mo-molybdopterin
- 114 binding [2Fe-2S] cluster
- 117 binding [2Fe-2S] cluster
- 149 binding [2Fe-2S] cluster
- 151 binding [2Fe-2S] cluster; binding Mo-molybdopterin
- 802 R → C: decreases homodimerization but nearly no effect on kinetic parameters; dbSNP:rs41309768
- 806:807 binding Mo-molybdopterin
- 921 R → H: increases homodimerization; abolishes enzymatic activity on phenanthridine; decreases turnover number with benzaldehyde, phtalazine and chloroquinazolinone as substrate, while nearly no effect on the KM; dbSNP:rs56199635
- 1047 binding Mo-molybdopterin
- 1088:1091 binding Mo-molybdopterin
- 1135 N → S: increases homodimerization and turnover number with phenanthridine as substrate; nearly no effect on kinetic parameters with benzaldehyde, phtalazine and chloroquinazolinone as substrate; dbSNP:rs55754655
- 1203 binding Mo-molybdopterin
- 1268 binding Mo-molybdopterin
- 1269 G→R: No effect on dimerization. Loss of oxidase activity.
- 1271 S → L: no effect on dimerization; no effect on oxidase activity; dbSNP:rs141786030
- 1297 H → R: increases homodimerization and turnover number with phenanthridine as substrate; nearly no effect on kinetic parameters with benzaldehyde, phtalazine and chloroquinazolinone as substrate; dbSNP:rs3731722
4uhxA Human aldehyde oxidase in complex with phthalazine and thioridazine (see paper)
24% identity, 79% coverage: 6:213/264 of query aligns to 209:441/1290 of 4uhxA
- binding flavin-adenine dinucleotide: P229 (≠ K26), V230 (≠ L27), I231 (≠ L28), M232 (≠ G29), G233 (= G30), N234 (≠ G31), T235 (≠ Q32), S236 (≠ T33), V237 (≠ L34), L310 (≠ I98), A311 (≠ G99), A319 (≠ G107), S320 (≠ T108), G323 (= G111), H324 (≠ S112), I326 (≠ C114), H329 (≠ D117), S332 (≠ A120), D333 (= D121), L377 (≠ V160), L404 (≠ Y183)
Sites not aligning to the query:
- active site: 732, 767, 843, 847, 875, 1223, 1224
- binding flavin-adenine dinucleotide: 43, 44
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 69, 71, 111, 112, 114, 146, 148
- binding 10-{2-[(2S)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine: 540, 542, 543, 1014, 1015, 1018, 1019, 1020, 1079
- binding 10-{2-[(2R)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine: 540, 542, 543, 1014, 1015, 1018, 1019, 1020
7orcB Human aldehyde oxidase in complex with raloxifene (see paper)
24% identity, 79% coverage: 6:213/264 of query aligns to 208:440/1299 of 7orcB
- binding flavin-adenine dinucleotide: P228 (≠ K26), V229 (≠ L27), I230 (≠ L28), M231 (≠ G29), G232 (= G30), N233 (≠ G31), T234 (≠ Q32), S235 (≠ T33), V236 (≠ L34), L309 (≠ I98), A310 (≠ G99), A318 (≠ G107), S319 (≠ T108), G322 (= G111), H323 (≠ S112), S326 (≠ N115), H328 (≠ D117), S331 (≠ A120), D332 (= D121), L376 (≠ V160), L403 (≠ Y183)
- binding raloxifene: G417 (vs. gap), D418 (vs. gap), G419 (vs. gap)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 69, 71, 111, 112, 114, 146, 148, 716
- binding raloxifene: 449, 451, 506, 507, 616, 619, 740, 743, 746
Query Sequence
>AZOBR_RS08555 FitnessBrowser__azobra:AZOBR_RS08555
MYAFTYHRPKSVADAVALLGQFEDPKLLGGGQTLLPTLKQRLARPSDLIDLGQIPELQGI
REEAGGLTVGAFTRHAQVAHSDTVQRVIPALASLAEGIGDRQVRNMGTLGGSICNADPSA
DYPAAAVALKATVRTDRREIAGDDFFTGMFETALEPGEIVTAVHFQKPDKAAYAKFRNPA
SRYAIVGVFVAVFGSEVRVAVTGAGPSVFRADDMEAALAQDFRADALNGASVSADGLNAD
IHASADYRAHLVRVMARRAVEACG
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory