Comparing AZOBR_RS11880 FitnessBrowser__azobra:AZOBR_RS11880 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5yhvA Crystal structure of an aminotransferase from mycobacterium tuberculosis
57% identity, 98% coverage: 6:382/384 of query aligns to 10:390/394 of 5yhvA
P96847 Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
57% identity, 98% coverage: 6:382/384 of query aligns to 4:384/388 of P96847
5yhvB Crystal structure of an aminotransferase from mycobacterium tuberculosis
57% identity, 98% coverage: 6:382/384 of query aligns to 3:383/387 of 5yhvB
Q58097 (5-formylfuran-3-yl)methyl phosphate transaminase; 4-HFC-P:alanine aminotransferase; EC 2.6.1.108 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
32% identity, 95% coverage: 16:379/384 of query aligns to 12:364/370 of Q58097
P14909 Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 3 papers)
30% identity, 91% coverage: 29:379/384 of query aligns to 31:391/402 of P14909
Sites not aligning to the query:
1gc4A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with aspartate (see paper)
35% identity, 96% coverage: 12:379/384 of query aligns to 10:378/382 of 1gc4A
1gc3A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with tryptophan (see paper)
35% identity, 96% coverage: 12:379/384 of query aligns to 10:378/382 of 1gc3A
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
35% identity, 96% coverage: 12:379/384 of query aligns to 10:378/382 of 1b5oA
1bkgA Aspartate aminotransferase from thermus thermophilus with maleate (see paper)
35% identity, 96% coverage: 12:379/384 of query aligns to 10:378/382 of 1bkgA
1bjwA Aspartate aminotransferase from thermus thermophilus (see paper)
35% identity, 96% coverage: 12:379/384 of query aligns to 10:378/382 of 1bjwA
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
35% identity, 96% coverage: 12:379/384 of query aligns to 10:378/385 of Q56232
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
32% identity, 97% coverage: 7:379/384 of query aligns to 10:378/384 of 1o4sB
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
31% identity, 91% coverage: 30:379/384 of query aligns to 21:378/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
31% identity, 91% coverage: 30:379/384 of query aligns to 21:378/388 of 1gd9A
6f77A Crystal structure of the prephenate aminotransferase from rhizobium meliloti (see paper)
30% identity, 96% coverage: 13:379/384 of query aligns to 10:391/399 of 6f77A
Q02635 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.79 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
30% identity, 96% coverage: 13:379/384 of query aligns to 11:392/400 of Q02635
1j32A Aspartate aminotransferase from phormidium lapideum
28% identity, 96% coverage: 12:379/384 of query aligns to 9:380/388 of 1j32A
3eleA Crystal structure of amino transferase (rer070207001803) from eubacterium rectale at 2.10 a resolution
30% identity, 96% coverage: 8:375/384 of query aligns to 13:385/398 of 3eleA
1w7nA Crystal structure of human kynurenine aminotransferase i in pmp form (see paper)
26% identity, 95% coverage: 19:383/384 of query aligns to 16:413/415 of 1w7nA
1w7mA Crystal structure of human kynurenine aminotransferase i in complex with l-phe (see paper)
26% identity, 95% coverage: 19:383/384 of query aligns to 16:413/415 of 1w7mA
Sites not aligning to the query:
>AZOBR_RS11880 FitnessBrowser__azobra:AZOBR_RS11880
MSKAPKVSKRGAIPPFFVMEVMRAAAEREAAGLEVLHMEVGQPSTGAPKGVLEAAHRMLD
ADVLGYTGALGIPALRAAIAGWYRDRYGIDVPERRVVVTTGSSGAFQLGFLAAFDPGDRV
AMASPSYPAYRHTLTAIGVEPVELPTGPEHRFQPTIELLEQLDPPIQGLIVASPANPTGT
MLSREELTALAAWCDAKGVRLVSDEIYHGLTYGPEAVTAAEVSESALVVNSFSKYFSMTG
WRLGWMIVPDDLIRSVECLAQNLFISAPSLSQAAAVAAFGCTEELDGHVARYARNRELLL
RELPKAGFDKLAPADGAFYIYADVTEMTDDSEAFCKRILAETGIACTPGVDFDPARGLRF
VRFSFAGAEETIAEAARRLIAWKR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory