SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS12550 FitnessBrowser__azobra:AZOBR_RS12550 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2q7sB Crystal structure of n-formylglutamate amidohydrolase (yp_297560.1) from ralstonia eutropha jmp134 at 2.00 a resolution
54% identity, 91% coverage: 19:279/288 of query aligns to 14:277/280 of 2q7sB

query
sites
2q7sB
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C
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D
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Y
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A
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D
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A
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V
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A
L
 
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E
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D
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T
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H
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D
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A
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L
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W
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E
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A
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V
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G
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G
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T
L
 
L
L
 
L
C
 
A
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A
L
 
T
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F
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P
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R
T
 
V
Y
 
Y
I
 
I
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D
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N
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R
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M
I
 
L
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D
D
 
D
I
 
I
D
 
D
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P
A
 
A
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Q
L
 
L
D
 
E
G
 
G
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P
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W
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P
E
 
T
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P
L
 
L
R
 
A
P
 
P
T
 
G
E
 
E
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T
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L
G
 
G
M
 
Y
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G
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L
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A
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D
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K
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L
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R
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R
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Y
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A
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A
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N
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A
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L
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E
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E
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Y
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K
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S
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L
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Q
L
 
I
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E
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R
R
 
R
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P
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L
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Y
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M
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E
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E
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T
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E
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R
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N
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A
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A
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Query Sequence

>AZOBR_RS12550 FitnessBrowser__azobra:AZOBR_RS12550
MSFVIEDVLVRNDPIVPRLPVFFDSPHSGTVYPRDFAFVCPLSTLRQAEDTHVDELFAHA
PEHGATLLCALFPRTYIDANRAIDDIDPALLDGRWPEPLRPTEKSAAGMGLIRTLCRPGM
PLYDGRLSVAEVAERIDRYYRPYHFQVASVMDDLADRFGAVWHVDCHSMPSAVGPGAAHK
LGMDFVLGDRDGTSCEPGFTALVERVLTGLGYKVTRNHPFKGVELVSRHSNPTRGRHSLQ
LEINRRLYMNEETLERNEGFARLQADLTTLTRRICAHAQASTARRAAE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory