Comparing AZOBR_RS16945 FitnessBrowser__azobra:AZOBR_RS16945 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
44% identity, 96% coverage: 4:409/421 of query aligns to 3:409/418 of 4xg1B
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
44% identity, 92% coverage: 27:413/421 of query aligns to 13:398/405 of B4XMC6
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
44% identity, 92% coverage: 27:414/421 of query aligns to 11:391/394 of 3c5qA
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
42% identity, 96% coverage: 4:409/421 of query aligns to 3:384/393 of 4xg1A
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
40% identity, 94% coverage: 21:416/421 of query aligns to 28:434/438 of Q58497
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
40% identity, 94% coverage: 21:416/421 of query aligns to 24:430/434 of 1twiA
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
40% identity, 94% coverage: 21:416/421 of query aligns to 24:430/434 of 1tufA
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
35% identity, 92% coverage: 8:395/421 of query aligns to 10:400/422 of 6n2aA
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
37% identity, 92% coverage: 18:403/421 of query aligns to 3:373/385 of 2yxxA
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
37% identity, 92% coverage: 18:403/421 of query aligns to 4:374/386 of Q9X1K5
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
33% identity, 96% coverage: 9:413/421 of query aligns to 21:444/446 of 1hkvA
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
33% identity, 96% coverage: 9:413/421 of query aligns to 22:445/447 of P9WIU7
1knwA Crystal structure of diaminopimelate decarboxylase
32% identity, 92% coverage: 18:406/421 of query aligns to 16:410/421 of 1knwA
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
32% identity, 92% coverage: 18:406/421 of query aligns to 16:410/419 of 1ko0A
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
32% identity, 92% coverage: 18:406/421 of query aligns to 17:411/420 of P00861
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
31% identity, 98% coverage: 2:413/421 of query aligns to 16:442/442 of 5x7nA
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
31% identity, 98% coverage: 2:413/421 of query aligns to 16:442/443 of 5x7mA
7ru7A Crystal structure of btrk, a decarboxylase involved in butirosin biosynthesis
29% identity, 95% coverage: 11:411/421 of query aligns to 1:408/412 of 7ru7A
8d5rA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- ornithine (see paper)
25% identity, 97% coverage: 4:413/421 of query aligns to 23:455/461 of 8d5rA
8d5dA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- arginine (see paper)
26% identity, 97% coverage: 4:413/421 of query aligns to 22:453/458 of 8d5dA
>AZOBR_RS16945 FitnessBrowser__azobra:AZOBR_RS16945
MSAFAYRNGVMHAESVPLSTIAAEVGTPFYCYSTAALEAHYSAYAGAFAGQDADVCYAVK
ANSNLAVIRAFARLGAGADVVSGGEMRRALAGGIPAGKIIFSGVGKTREEMRAALEAGIH
QINVESIPEVEALSEVAVSLGVTAPIAFRVNPDVDAKTHAKIATGKKENKFGVDYDHARE
VYAQAAKLPGIKPVAIAVHIGSQLTDLAPFRAAYERVAALLHVLREDGHDITRLDLGGGL
GIVYKHEAPPDIADYAAMVKSITGNLGCRISLEPGRSLVGNAGILVSRVIYLKQGLHRRF
VIIDAAMNDLIRPTLYEAYHGIVPVTEPAKGAATEPYDVVGPVCESGDTFALQRALPAMA
PDELVAILSAGAYGAVMSSTYNTRPLIPEVLVNGDQFSVIRPRVSVEELLALDRVPDWLK
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Lawrence Berkeley National Laboratory