SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS17130 FitnessBrowser__azobra:AZOBR_RS17130 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
46% identity, 93% coverage: 4:156/165 of query aligns to 4:156/156 of 1nxjA

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1nxjA
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2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
45% identity, 90% coverage: 7:155/165 of query aligns to 4:152/158 of 2yjvC

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2yjvC
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Query Sequence

>AZOBR_RS17130 FitnessBrowser__azobra:AZOBR_RS17130
MTDFDSTCDLYDRFEKTARVADPVFRDFGRRCKFSGAAVTVKCFEDNSRVKELLGTPGRG
KVLVVDGGGGLRAALMGDLIAKDAVKNGWEGVVIHGCVRDAAVLATLDLGIKALAAIPRK
TVRNGEGQKDLPVTLAGIRINPGDLVFADEDGVLVLTPEEFGAAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory