Comparing AZOBR_RS18180 FitnessBrowser__azobra:AZOBR_RS18180 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
28% identity, 98% coverage: 7:273/273 of query aligns to 14:281/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
31% identity, 76% coverage: 66:273/273 of query aligns to 84:296/296 of P68183
>AZOBR_RS18180 FitnessBrowser__azobra:AZOBR_RS18180
MKHNSTARTLAVLVLLGVAAFPLYWMLVTSLTPSERLFDDRPNLLPTLSQIGTYAAAFTE
TSLRQWLINSLIVAVGTTVLSILLSVLPAYALSRLTFNGKLLLGFALFMTQMLPEAMLVV
PLYDIFTKLSLLNTLLGLILANTAFTVPVVTWILKGAIDGVPSEIEEAARVDGCSRLGIV
LAVVVPLIAPTLAAAAVIAFFHGWNEYVFAQTFISDDALRTASVGLASFVGELSTPVHTV
MAVGFIYTLPAVVFYLFVQRYVVAGMTTGGVKG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory