SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS18880 FitnessBrowser__azobra:AZOBR_RS18880 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
32% identity, 97% coverage: 1:147/152 of query aligns to 502:650/650 of O31645

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O31645
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Sites not aligning to the query:

P46321 Probable licABCH operon regulator; EC 2.7.1.- from Bacillus subtilis (strain 168) (see paper)
32% identity, 61% coverage: 18:109/152 of query aligns to 514:601/641 of P46321

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P46321
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Sites not aligning to the query:

P00550 PTS system mannitol-specific EIICBA component; EIICBA-Mtl; EII-Mtl; EC 2.7.1.197 from Escherichia coli (strain K12) (see 2 papers)
28% identity, 85% coverage: 15:143/152 of query aligns to 506:633/637 of P00550

query
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P00550
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Sites not aligning to the query:

1j6tA Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
28% identity, 85% coverage: 15:143/152 of query aligns to 14:141/144 of 1j6tA

query
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1j6tA
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Query Sequence

>AZOBR_RS18880 FitnessBrowser__azobra:AZOBR_RS18880
MLDLITPHAILPNLKAGSKKQALQDLARKASELTGQHERAIFDVLLERERLGTTGVGHGI
AIPHGKLPNLDRVHGVFARLERPIDFDAIDEQPVDLIFLLLAPDHAGADHLKALARVSRL
LRDQSMCEKLRGSDSADAIYALLTQHEASHAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory