Comparing AZOBR_RS19470 FitnessBrowser__azobra:AZOBR_RS19470 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
26% identity, 66% coverage: 55:199/221 of query aligns to 54:201/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
26% identity, 66% coverage: 55:199/221 of query aligns to 54:201/214 of 4ymwC
>AZOBR_RS19470 FitnessBrowser__azobra:AZOBR_RS19470
LSPEIYALLFKALLDTLYMVAVSGLLGTALGLPLGVLLAVTGRGELLQNLAFNRVAGVLV
NMTRSTPFIILVVAIIPFTRLIAGTSIGTAAAIVPLTVAAVPFIARIVEGAVREVDRGLI
EAAQSMGATPFQIIRKVLLPEAMPAIALGLTLSVVSLIGYSAMVGAVGGGGLGDLGIRYG
YQRFLPEVMLAVVVVLIVLVQIVQSTGDWIARRVNKRNLKS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory