Comparing AZOBR_RS21780 FitnessBrowser__azobra:AZOBR_RS21780 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
37% identity, 98% coverage: 7:324/326 of query aligns to 3:321/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
37% identity, 98% coverage: 7:324/326 of query aligns to 2:310/310 of 4fwiB
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
33% identity, 90% coverage: 31:325/326 of query aligns to 20:327/330 of P0AAH4
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 72% coverage: 30:265/326 of query aligns to 17:248/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
36% identity, 78% coverage: 13:265/326 of query aligns to 1:249/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
36% identity, 78% coverage: 13:265/326 of query aligns to 1:249/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
36% identity, 78% coverage: 13:265/326 of query aligns to 1:249/344 of 3tuiC
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
37% identity, 70% coverage: 32:260/326 of query aligns to 17:246/253 of 7z15I
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
37% identity, 70% coverage: 32:260/326 of query aligns to 17:246/250 of 7z18I
Sites not aligning to the query:
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
37% identity, 70% coverage: 32:260/326 of query aligns to 17:246/250 of 7z16I
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
35% identity, 72% coverage: 24:259/326 of query aligns to 7:237/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 73% coverage: 22:258/326 of query aligns to 6:236/241 of 4u00A
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
34% identity, 72% coverage: 26:261/326 of query aligns to 35:266/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
34% identity, 72% coverage: 26:261/326 of query aligns to 35:266/382 of 7aheC
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
33% identity, 72% coverage: 26:259/326 of query aligns to 11:239/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
33% identity, 72% coverage: 26:259/326 of query aligns to 11:239/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
33% identity, 72% coverage: 26:259/326 of query aligns to 11:239/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
33% identity, 72% coverage: 26:259/326 of query aligns to 11:239/242 of 2oljA
7ahdC Opua (e190q) occluded (see paper)
34% identity, 71% coverage: 26:255/326 of query aligns to 35:260/260 of 7ahdC
Sites not aligning to the query:
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
36% identity, 64% coverage: 29:238/326 of query aligns to 19:217/218 of 7w78A
Sites not aligning to the query:
>AZOBR_RS21780 FitnessBrowser__azobra:AZOBR_RS21780
MPATGPVVLEAIHLRKHYAVKRGAFKPAATVKALDGVSFQLEAGKTLAVVGESGCGKSTL
ARSVTMIEPPSSGQLLYDGRDVVGRTASEMKELRRTVQMVFQNPYGSLNPRKTVGSILSE
PLVINTPMGKQERRERAVAMMAKVGLRPDQVDRYPHMFSGGQRQRIAIARALMLNPRVVV
ADEPVSALDVSIQAQVLNLMMDLQEELNLAYLFISHDLSVVRHIADAVMVMYLGRPVEHG
PKDVVYSRPRHPYTRILMAATPRVNPALRAERVIPKGELPSPLNPPPGCPFHKRCPYATE
RCATEVPALRPVDERLVACHFAEEMA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory