SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS23510 FitnessBrowser__azobra:AZOBR_RS23510 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2q7sB Crystal structure of n-formylglutamate amidohydrolase (yp_297560.1) from ralstonia eutropha jmp134 at 2.00 a resolution
29% identity, 83% coverage: 12:233/266 of query aligns to 15:249/280 of 2q7sB

query
sites
2q7sB
P
 
P
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L
L
 
V
V
 
C
S
 
D
L
 
S
P
 
P
H
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S
G
 
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T
 
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A
 
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Y
P
 
P
D
 
A
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D
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F
I
 
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G
 
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L
 
V
V
 
A
P
 
P
E
 
E
-
 
R
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L
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R
G
 
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L
 
G
P
 
E
D
|
D
T
 
T
D
 
-
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-
H
 
H
L
 
V
P
 
D
R
 
A
L
 
L
Y
 
W
D
 
E
F
 
A
L
 
V
E
 
P
D
 
R
L
 
V
G
 
G
V
 
G
G
 
T
V
 
L
I
 
L
Q
 
A
A
 
A
R
 
T
F
 
F
S
 
P
R
 
R
Y
 
V
V
 
Y
V
 
I
D
 
D
L
 
P
N
 
N
R
 
R
P
 
M
S
 
L
N
 
D
D
 
D
-
 
I
-
 
D
-
 
P
-
 
A
-
 
Q
-
 
L
-
 
E
-
 
G
-
 
P
-
 
W
-
 
P
T
 
T
P
 
P
L
 
L
Y
 
A
S
 
P
G
 
G
A
 
E
T
 
K
T
 
T
-
 
R
-
 
L
-
 
G
-
 
Y
G
 
G
L
 
L
C
 
I
P
 
W
T
 
S
T
 
N
L
 
V
F
 
D
D
 
A
G
 
A
A
 
T
P
 
P
L
 
I
Y
 
Y
Q
 
D
P
 
-
G
 
-
A
 
R
E
 
K
P
 
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D
 
T
P
 
V
G
 
A
E
 
E
V
 
V
A
 
Q
E
 
R
R
 
R
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I
T
 
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R
 
R
Y
 
Y
W
 
Y
T
 
R
P
 
P
Y
 
Y
H
 
H
D
 
A
A
 
A
I
 
L
T
 
T
A
 
E
E
 
A
M
 
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E
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G
L
 
A
R
 
Y
D
 
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R
 
R
F
 
F
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G
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A
A
 
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W
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H
F
 
L
D
 
N
A
 
L
H
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H
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S
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M
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P
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N
V
 
N
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A
P
 
Y
R
 
E
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R
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L
E
 
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G
 
I
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Q
L
 
S
P
 
P
-
 
R
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P
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L
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A
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D
L
 
F
N
 
V
I
 
L
G
 
G
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R
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D
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R
 
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E
P
 
P
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G
L
 
L
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D
R
 
-
L
 
-
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-
A
 
L
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V
G
 
E
A
 
R
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E
A
 
L
G
 
R
A
 
E
D
 
K
G
 
G
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Y
T
 
T
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A
L
 
R
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N
G
 
D
R
 
P
F
 
Y
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K
G
 
G
G
 
V
H
 
Q
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L
T
 
I
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A
H
 
Q
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I
G
 
G
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R
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P
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A
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E
G
 
R
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R
H
 
N
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S
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L
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Q
L
 
I
E
 
E
M
 
I
A
 
R
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R
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P
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L
Y
 
Y
M
 
M
E
 
E
E
 
E

Query Sequence

>AZOBR_RS23510 FitnessBrowser__azobra:AZOBR_RS23510
MDVFGFRAARRPVLVSLPHVGTALPDGFIGRLVPEAQGLPDTDWHLPRLYDFLEDLGVGV
IQARFSRYVVDLNRPSNDTPLYSGATTGLCPTTLFDGAPLYQPGAEPDPGEVAERVTRYW
TPYHDAITAEMTRLRDRFGRAVLFDAHSIRSVVPRLFEGRLPDLNIGTNDGRSADPVLSD
RLVAVGADAGADGFTHVLNGRFKGGHITRHFGRPSEGWHAVQLEMAQVTYMEEDAPFAFD
EARAERIRPHLRRFIGAMADWAEERA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory