SitesBLAST

Q7WTT9 Arsenate respiratory reductase iron-sulfur subunit ArrB; Arsenate respiratory reductase small subunit; ARR small subunit from Shewanella sp. (strain ANA-3) (see paper)
36% identity, 70% coverage: 45:220/250 of query aligns to 2:225/234 of Q7WTT9

query
sites
Q7WTT9

R

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M

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D

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E

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-

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I

C12 (= C55) binding
C15 (= C58) binding
C18 (= C61) binding
C22 (= C65) binding
C57 (= C100) binding
C60 (= C103) binding
C65 (= C108) binding
C69 (= C112) binding
C89 (= C132) binding
C92 (= C135) binding
C95 (= C138) binding
C99 (= C142) binding
C164 (= C159) binding
C167 (= C162) binding
C179 (= C174) binding
C183 (= C178) binding

P18776 Anaerobic dimethyl sulfoxide reductase chain B; DMSO reductase iron-sulfur subunit from Escherichia coli (strain K12) (see 2 papers)
39% identity, 68% coverage: 45:215/250 of query aligns to 4:191/205 of P18776

query
sites
P18776

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Y

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P

C102 (= C135) mutation C->F,S,W,Y: Loss of electron transfer from menaquinol to DMSO.

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

2ivfB Ethylbenzene dehydrogenase from aromatoleum aromaticum (see paper)
44% identity, 51% coverage: 94:220/250 of query aligns to 130:258/337 of 2ivfB

query
sites
2ivfB

Y

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Y

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x
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N

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x
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binding fe3-s4 cluster: C148 (= C112), T150 (= T114), I153 (≠ T117), C169 (= C132), K170 (≠ V133), G171 (= G134), H172 (≠ C135), R173 (≠ A136), H174 (≠ Y137), C175 (= C138), S193 (≠ A156)
binding protoporphyrin ix containing fe: T150 (= T114), K170 (≠ V133), H172 (≠ C135)
binding iron/sulfur cluster: M135 (≠ L99), C136 (= C100), N137 (= N101), H138 (= H102), C139 (= C103), P142 (= P106), C144 (= C108), V162 (= V125), C179 (= C142), A183 (= A146), I184 (≠ R147), K195 (= K158), C196 (= C159), I197 (≠ T160), L198 (≠ F161), C199 (= C162), N209 (≠ P172), C211 (= C174), C215 (= C178), V219 (≠ A182), R220 (= R183)

Sites not aligning to the query:

binding iron/sulfur cluster: 13, 14, 15, 16, 17, 19, 23, 27, 38, 39, 41

5ch7B Crystal structure of the perchlorate reductase pcrab - phe164 gate switch intermediate - from azospira suillum ps (see paper)
42% identity, 57% coverage: 94:235/250 of query aligns to 127:271/329 of 5ch7B

query
sites
5ch7B

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N

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binding fe3-s4 cluster: C145 (= C112), I150 (≠ T117), C166 (= C132), K167 (≠ V133), G168 (= G134), A169 (≠ C135), Q170 (≠ A136), A171 (≠ Y137), C172 (= C138), A190 (= A156)
binding iron/sulfur cluster: P130 (= P97), C133 (= C100), N134 (= N101), C136 (= C103), P139 (= P106), C141 (= C108), C176 (= C142), C193 (= C159), G195 (≠ F161), C196 (= C162), C208 (= C174), C212 (= C178), V213 (= V179), G214 (= G180)

Sites not aligning to the query:

binding iron/sulfur cluster: 17, 18, 19, 20, 21, 23, 27, 31, 43, 45

P0AAJ3 Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; Anaerobic formate dehydrogenase iron-sulfur subunit; Formate dehydrogenase-N subunit beta; FDH-N subunit beta from Escherichia coli (strain K12) (see paper)
33% identity, 77% coverage: 47:238/250 of query aligns to 31:254/294 of P0AAJ3

query
sites
P0AAJ3

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N

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-

A

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G

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G

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K

C39 (= C55) binding
C42 (= C58) binding
C45 (= C61) binding
C49 (= C65) binding
C100 (= C100) binding
C103 (= C103) binding
C108 (= C108) binding
C112 (= C112) binding
C133 (= C132) binding
C136 (= C135) binding
C139 (= C138) binding
C143 (= C142) binding
C160 (= C159) binding
C163 (= C162) binding
C175 (= C174) binding
C179 (= C178) binding

1kqfB Formate dehydrogenase n from e. Coli (see paper)
33% identity, 77% coverage: 47:238/250 of query aligns to 30:253/289 of 1kqfB

query
sites
1kqfB

A

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x
K

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C

T

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A

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C

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M

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E

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N
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E

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x
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x
I

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C

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Y

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C

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A

A

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C

P

P

Y

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x
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N

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C

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x
P

G

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x
I

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A

A

T

K

L

L

V

K

R

A

E

R

-

G

-

Y

E

E

N

H

P

A

K

G

V

V

L

Y

K

N

P

P

E

E

-

G

-

V

-

G

-

T

-

H

-

V

-

M

-

Y

-

V

-

L

-

H

Q

H

G

A

T

D

Q

Q

P

P

R

E

V

L

F

Y

Y

H

-

G

L

L

G

P

L

K

D

D

P

P

R

-

F

-

Q

-

G

-

K

K

V

I

D

D

G

T

T

S

P

V

T

S

L

L

W
|
W

R

K

binding protoporphyrin ix containing fe: Y137 (= Y137), W252 (= W237)
binding iron/sulfur cluster: K31 (≠ M48), C38 (= C55), I39 (≠ V56), G40 (= G57), C41 (= C58), K42 (≠ Q59), C44 (= C61), C48 (= C65), N52 (= N69), T77 (= T78), M79 (≠ V80), C99 (= C100), M100 (≠ N101), H101 (= H102), C102 (= C103), P105 (= P106), C107 (= C108), C111 (= C112), P112 (= P113), I117 (≠ T117), V125 (= V125), C132 (= C132), I133 (≠ V133), G134 (= G134), C135 (= C135), G136 (≠ A136), Y137 (= Y137), C138 (= C138), C142 (= C142), I146 (≠ A146), P147 (≠ R147), V156 (≠ A156), K158 (= K158), C159 (= C159), L161 (≠ F161), C162 (= C162), P172 (= P172), C174 (= C174), C178 (= C178), P179 (≠ V179), I183 (≠ R183)

4v4cB Pyrogallol hydroxytransferase small subunit (see paper)
34% identity, 74% coverage: 44:227/250 of query aligns to 2:195/274 of 4v4cB

query
sites
4v4cB

H

E

R

Q

W

Y

A

Y

M

M

V

V

V

I

D

D

V

V

R

A

K

K

C
|
C

V
x
Q

G
x
D

C
|
C

Q
x
N

A
x
N

C
|
C

T

F

V

M

A

G

C
|
C

I

M

M

D

E

E

N

H

D

E

V

L

P

N

E

E

N

W

S

P

F

G

R

Y

T

T

I

A

V

S

S

M

T

Q

-

R

-

G

-

H

-

R

Y

W

E

M

V

N

T

I

E

E

Q

R

G

R

K

E

A

R

G

G

S

T

Y

Y

-

P

-

R

-

N

-

D

-
x
I

-
x
N

M

Y

L

R

P

P

R

T

L

P

C
|
C

N
x
M

H
|
H

C
|
C

E

E

D

N

P

A

P

P

C
|
C

I

V

P

A

V

K

C

-

P

G

T

N

G

G

A

A

T

V

F

Y

Q

Q

R

R

R

E

D

D

G

G

I

I

V
|
V

V

L

V

I

D

D

N

P

T

E

V

K

C

A

V

K

G

G

C

K

A

K

Y

E

C

L

V

L

Q

D

A

T

C
|
C

P

P

Y

Y

D

G

A
x
V

R

M

F

Y

I

W

N

N

H

E

E

E

T

E

Q

N

T

V

A

A

D

Q

K

K

C
|
C

T

T

F
x
M

C
|
C

V

A

H

H

R

L

V

L

E

D

-

D

-

E

-

S

-

W

A

A

G

P

L

K

L

M

P
|
P

A

R

C
|
C

V

A

E

H

T

N

C
|
C

V

-

G

-

G

G

A
x
S

R

F

I
x
V

F
x
Y

G

E

D

F

L

L

N

K

D

T

P

T

D

P

S

E

A

A

V

M

A

A

T

K

L

K

V

V

R

E

E

E

N

G

P

L

K

E

V

V

L

I

K

K

P

P

E

E

Q

L

G

G

T

T

Q

K

P

P

R

R

V

V

F

Y

Y

Y

L

K

G

N

L

L

D

-

P

Y

R

R

F

F

Q

E

binding calcium ion: I61 (vs. gap), N62 (vs. gap)
binding iron/sulfur cluster: C13 (= C55), Q14 (≠ V56), D15 (≠ G57), C16 (= C58), N17 (≠ Q59), N18 (≠ A60), C19 (= C61), C23 (= C65), C68 (= C100), M69 (≠ N101), H70 (= H102), C71 (= C103), C76 (= C108), V92 (= V125), C109 (= C142), V113 (≠ A146), C126 (= C159), M128 (≠ F161), C129 (= C162), P143 (= P172), C145 (= C174), C149 (= C178), S151 (≠ A182), V153 (≠ I184), Y154 (≠ F185)

3egwB The crystal structure of the narghi mutant narh - c16a
40% identity, 56% coverage: 96:234/250 of query aligns to 180:318/509 of 3egwB

query
sites
3egwB

L

L

P
|
P

R

R

L

L

C
|
C

N
x
E

H
|
H

C
|
C

E

L

D

N

P
|
P

P

A

C
|
C

I

V

P

A

V

T

C
|
C

P

P

T
x
S

G

G

A

A

T
x
I

F

Y

Q

K

R

R

R

E

-

E

D

D

G

G

I

I

V

V

V

L

V

I

D

D

N

Q

T

D

V

K

C
|
C

V
x
R

G
|
G

C
x
W

A
x
R

Y

M

C
|
C

V

I

Q

T

A

G

C
|
C

P

P

Y

Y

D

K

A

K

R
x
I

F

Y

I

F

N

N

H

W

E

K

T

S

Q

G

T

K

A
x
S

D

E

K
|
K

C
|
C

T

I

F
|
F

C
|
C

V

Y

H

P

R

R

V

I

E

E

A

A

G

G

L

Q

L

P

P
x
T

A

V

C
|
C

V

S

E

E

T

T

C
|
C

V

V

G
|
G

G

R

A

I

R
|
R

I

Y

F

L

G

G

D

V

L

L

N

L

D

Y

P

D

D

A

S

D

A

A

V

I

A

E

T

R

L

A

V

A

R

S

E

T

E

E

N

N

P

E

K

K

V

D

L

L

K

Y

P

Q

E

R

Q

Q

G

L

T

D

Q

-

P

-

R

-

V

V

F

F

Y

L

L

D

G

P

L

N

D

D

P

P

R

K

F

V

-

I

-

E

Q

Q

G

A

K

I

V

K

D

D

G

G

T

I

P

P

binding fe3-s4 cluster: P181 (= P97), C196 (= C112), S198 (≠ T114), I201 (≠ T117), C217 (= C132), R218 (≠ V133), G219 (= G134), W220 (≠ C135), R221 (≠ A136), C223 (= C138), S241 (≠ A156), C263 (= C178), G265 (= G180), R268 (= R183)
binding protoporphyrin ix containing fe: W220 (≠ C135), R221 (≠ A136)
binding iron/sulfur cluster: C184 (= C100), E185 (≠ N101), H186 (= H102), C187 (= C103), P190 (= P106), C192 (= C108), C227 (= C142), I232 (≠ R147), K243 (= K158), C244 (= C159), F246 (= F161), C247 (= C162), T257 (≠ P172), C259 (= C174)

Sites not aligning to the query:

binding fe3-s4 cluster: 17, 18, 19, 20, 22
binding protoporphyrin ix containing fe: 88, 89
binding iron/sulfur cluster: 26, 30, 41, 42

P11349 Respiratory nitrate reductase 1 beta chain; Nitrate reductase A subunit beta; Quinol-nitrate oxidoreductase subunit beta; EC 1.7.5.1 from Escherichia coli (strain K12) (see 2 papers)
40% identity, 56% coverage: 96:234/250 of query aligns to 180:318/512 of P11349

query
sites
P11349

L

L

P

P

R

R

L

L

C
|
C

N

E

H

H

C
|
C

E

L

D

N

P

P

P

A

C
|
C

I

V

P

A

V

T

C
|
C

P

P

T

S

G

G

A

A

T

I

F

Y

Q

K

R

R

R

E

-

E

D

D

G

G

I

I

V

V

V

L

V

I

D

D

N

Q

T

D

V

K

C
|
C

V

R

G

G

C

W

A

R

Y

M

C
|
C

V

I

Q

T

A

G

C
|
C

P

P

Y

Y

D

K

A

K

R

I

F

Y

I

F

N

N

H

W

E

K

T

S

Q

G

T

K

A

S

D

E

K

K

C
|
C

T

I

F

F

C
|
C

V

Y

H

P

R

R

V

I

E

E

A

A

G

G

L

Q

L

P

P

T

A

V

C
|
C

V

S

E

E

T

T

C
|
C

V

V

G

G

G

R

A

I

R

R

I

Y

F

L

G

G

D

V

L

L

N

L

D

Y

P

D

D

A

S

D

A

A

V

I

A

E

T

R

L

A

V

A

R

S

E

T

E

E

N

N

P

E

K

K

V

D

L

L

K

Y

P

Q

E

R

Q

Q

G

L

T

D

Q

-

P

-

R

-

V

V

F

F

Y

L

L

D

G

P

L

N

D

D

P

P

R

K

F

V

-

I

-

E

Q

Q

G

A

K

I

V

K

D

D

G

G

T

I

P

P

C184 (= C100) binding
C187 (= C103) binding
C192 (= C108) binding
C196 (= C112) binding
C217 (= C132) binding
C223 (= C138) binding
C227 (= C142) binding
C244 (= C159) binding
C247 (= C162) binding
C259 (= C174) binding
C263 (= C178) binding

Sites not aligning to the query:

16 binding
19 binding
22 binding
26 binding

6f0kB Alternative complex iii (see paper)
29% identity, 76% coverage: 31:220/250 of query aligns to 708:948/961 of 6f0kB

query
sites
6f0kB

P

P

S

S

A

K

A

Q

P

P

L

A

R

F

R

Q

D

D

G

S

N

D

P
x
Y

A

Y

-

R

H

N

R

Q

W

W

A

A

M

M

V

V

V

I

D

D

V

L

R

N

K

A

C
|
C

V
x
T

G
|
G

C
|
C

Q
x
N

A
|
A

C
|
C

T

I

V

V

A

A

C
|
C

I

D

M

S

E

E

N

N

D

N

V

I

P

P

E

M

N

V

S

G

F

K

R

N

T

E

I

V

-

G

-

R

-

G

-

R

-

E

-

M

-

H

-
x
W

-

L

-

R

V
x
I

S

D

T

R

Y

Y

E

F

V

V

T

S

E

D

Q

E

G

A

K

H

A

A

G

D

S

D

Y

P

M

Q

L

I

-

V

-

Q

P

P

R

V

L

P

C
|
C

N
x
M

H
|
H

C
|
C

E

E

D

N

P

A

P
|
P

C
|
C

I

E

P

S

V

V

C
|
C

P

P

T
x
V

G

A

A

A

T

T

F

V

Q

H

R

S

R

P

D

D

G

G

I

L

V
x
N

V

E

V
x
M

D

V

N

Y

T
x
N

V
x
R

C
|
C

V
x
I

G
|
G

C

T

A

R

Y

Y

C
|
C

V

S

Q

N

A

N

C
|
C

P

P

Y

Y

D

K

A

V

R

R

F

R

I

F

N

N

H

W

-

F

-

N

-

W

-

V

-

K

-

T

-

L

-

P

-

I

E

Q

T

V

Q

Q

T

M

A

A

-

Q

-

N

-

P

-

D

-

V

-

T

-

V

-

R

-

F

-

R

-

G

-

V

-
x
M

D

E

K

K

C
|
C

T

T

F
x
Y

C
|
C

V

V

H

Q

R

R

V

I

-

R

-

E

-

A

-

Q

-
x
R

-

Q

-

A

-
x
N

-

I

-

E

-

K

-

R

-

P

-

L

-

R

E

D

A

G

G

E

L

V

L

K

P

T

A
|
A

C
|
C

V

Q

E

Q

T

A

C
|
C

V

P

G

A

G

E

A

A

R

I

I

T

F

F

G

G

D

D

L

L

N

N

D

D

P

P

D

N

S

N

A

A

V

V

A

V

T

K

L

Q

V

R

R

Q

E

N

E

A

N

R

P

R

K

Y

V

E

L

M

K

L

P

A

E

A

Q

L

G

N

T

V

Q

K

P

P

R

R

V

T

F

S

Y

Y

L

L

binding fe3-s4 cluster: C803 (= C112), V805 (≠ T114), M818 (≠ V127), C823 (= C132), I824 (≠ V133), G825 (= G134), C829 (= C138), M869 (vs. gap)
binding heme c: Y719 (≠ P42), N821 (≠ T130), R822 (≠ V131), R884 (vs. gap), N887 (vs. gap)
binding iron/sulfur cluster: C733 (= C55), T734 (≠ V56), G735 (= G57), C736 (= C58), N737 (≠ Q59), A738 (= A60), C739 (= C61), C743 (= C65), W765 (vs. gap), I768 (≠ V80), C791 (= C100), M792 (≠ N101), H793 (= H102), C794 (= C103), P798 (= P107), C799 (= C108), N816 (≠ V125), C833 (= C142), C872 (= C159), Y874 (≠ F161), C875 (= C162), A901 (= A173), C902 (= C174), C906 (= C178)

6btmB Structure of alternative complex iii from flavobacterium johnsoniae (wild type) (see paper)
26% identity, 72% coverage: 39:219/250 of query aligns to 677:942/948 of 6btmB

query
sites
6btmB

D

D

G

R

N

T

P

T

A

G

H

H

R

H

W

F

A

N

M

L

V

S

V

I

D

D

V

L

R

N

K

A

C

C

V

T

G

G

C

C

Q

G

A

A

C

C

T

V

V

I

A

A

C

C

I

H

M

A

E

E

N

N

D

N

V

V

P

P

E

V

-

V

-

G

-

K

-

A

-

E

-

V

-

R

-

S

-

R

-

D

-

M

-

H

-

W

-

L

-

R

-

I

N

D

S

R

F

Y

R

Y

T

S

I

S

V

E

S

S

T

T

Y

F

E

E

V

G

T

D

E

N

Q

E

G

R

K

K

A

E

G

G

S

I

Y

A

M

G

L

L

-

S

-

L

-

S

-

T

-

F

-

N

-

E

-

M

-

E

-

K

-

P

-

G

-

D

-

N

-

P

-

Q

-

V

-

A

-

F

-

Q

P

P

R

V

L

M

C
|
C

N
x
Q

H

H

C
|
C

E

N

D

H

P

A

P

P

C
|
C

I

E

P

T

V

V

C
|
C

P

P

T

V

G

A

A

A

T

T

F

S

Q

H

R

G

R

R

D

Q

G

G

I

Q

V
x
N

V

H

V

M

D

A

N

Y

T

N

V

R

C
|
C

V
|
V

G

G

C
x
T

A

R

Y

Y

C
|
C

V

A

Q

N

A

N

C
|
C

P

P

Y

Y

D

K

A

V

R
|
R

F

R

I

F

N

N

-

W

-

F

-

L

-

Y

-

N

-

K

-

N

-

S

-

E

-

F

-

D

-

Y

-

H

-

M

-

N

-

D

-

L

-

G

-

R

-

M

-

V

-

L

-

N

-

P

-

D

-

V

-

N

-

V

H

R

E

S

T

R

Q

G

T

V

A
x
M

D

E

K

K

C

C

T

S

F

F

C

C

V

I

H

Q

R

S

V

T

E

Q

A

A

G

V

L

I

L

L

P

E

A

A

C

K

V

R

E

Q

T

G

C

R

V

V

-

V

-

G

-

K

-

D

-

E

-

F

-

N

-

A

-

C

-

A

-

C

-

S

-

A

-

C

-

S

G

S

G

G

A

A

R

M

I

V

F

F

G

G

D

D

L

V

N

N

D

D

P

K

D

E

S

S

A

E

V

V

A

A

T

K

L

L

V

A

R

E

E

S

E

E

N

R

P

M

K

Y

V

H

L

L

K

L

P

E

E

H

Q

V

G

G

T

T

Q

K

P

P

R

N

V

V

F

F

Y

Y

binding fe3-s4 cluster: C789 (= C112), C809 (= C132), V810 (= V133), T812 (≠ C135), C815 (= C138), M862 (≠ A156)
binding iron/sulfur cluster: C777 (= C100), Q778 (≠ N101), C780 (= C103), C785 (= C108), N802 (≠ V125), C819 (= C142), R824 (= R147)

Sites not aligning to the query:

binding (2R)-3-{[(2R)-2-(decanoylamino)-3-hydroxypropyl]sulfanyl}propane-1,2-diyl ditetradecanoate: 1, 2

6lodB Cryo-em structure of the air-oxidized photosynthetic alternative complex iii from roseiflexus castenholzii (see paper)
27% identity, 71% coverage: 43:220/250 of query aligns to 680:917/929 of 6lodB

query
sites
6lodB

A

G

H

Y

R

K

W

W

A

G

M

M

V

S

V

I

D

D

V

L

R

N

K

V

C
|
C

V
x
N

G
x
S

C
|
C

Q
x
N

A
|
A

C
|
C

T

V

V

V

A

A

C
|
C

I

Q

M

S

E

E

N
|
N

D

N

V

I

P

P

-

V

-

G

-

K

-

D

-

E

-

V

-

W

-

L

-

G

E

R

N

E

S

M

F

H

R
x
W

T

I

I

R

V
x
I

S

D

T

Q

Y

Y

E

Y

V

V

T

G

E

D

Q

E

G

H

K

T

A

P

G

N

S

V

Y

Y

M

N

L

M

P

V

R

M

L
|
L

C
|
C

N
x
Q

H
x
Q

C
|
C

E

E

D

H

P

A

P
|
P

C
|
C

I

E

P

I

V
|
V

C
|
C

P
|
P

T

V

G

A

A

A

T

T

F

V

Q

H

R

D

R

A

D

E

G

G

I

L

V
x
N

V

N

V

M

D

V

N

Y

T
x
N

V
x
R

C
|
C

V
|
V

G
|
G

C
x
T

A

K

Y

Y

C
|
C

V

S

Q

N

A

N

C
|
C

P

P

Y
|
Y

D

K

A
x
V

R
|
R

-

R

-

F

-

N

F

F

I

L

N

Q

H

Y

E

Q

T

D

-

V

-

P

-

Y

-

R

-

S

-

P

-

I

-

D

-

A

-

S

-

T

-

E

-

N

-

D

-

S

-

I

-

P

-

V

-

L

-

K

-

M

-

R

-

N

-

P

-

D

-

V

-

T

-

V

-

R

-

A

-

R

Q

G

T

V

A
x
M

D

E

K
|
K

C
|
C

T

T

F
|
F

C
|
C

V

V

H

Q

R

R

V

I

-

N

-

E

-

A

-
x
R

-
x
I

-

Q

-

A

-
x
R

-

T

-

E

-

N

-

R

-

I

-

A

E

D

A

G

G

E

L

I

L

M

P
x
T

A

A

C
|
C

V

Q

E

Q

T

V

C
|
C

V

P

G

T

G

Q

A

A

R
x
I

I

V

F

F

G

G

D

D

L

L

N

N

D

D

P

P

D

Q

S

A

A

R

V

V

A

V

T

D

L

L

V

K

R

E

E

Q

E

P

N

L

P

K

K

Y

V

T

L

S

K

L

P

D

E

K

Q

L

G

N

T

T

Q

K

P

P

R

R

V

V

F

S

Y

Y

L

L

binding fe3-s4 cluster: V758 (= V111), C759 (= C112), P760 (= P113), C779 (= C132), V780 (= V133), G781 (= G134), T782 (≠ C135), C785 (= C138), M838 (≠ A156)
binding heme c: N777 (≠ T130), R778 (≠ V131), R852 (vs. gap), I853 (vs. gap), R856 (vs. gap)
binding iron/sulfur cluster: C692 (= C55), N693 (≠ V56), S694 (≠ G57), C695 (= C58), N696 (≠ Q59), A697 (= A60), C698 (= C61), C702 (= C65), N706 (= N69), W724 (≠ R77), I727 (≠ V80), L746 (= L99), C747 (= C100), Q748 (≠ N101), Q749 (≠ H102), C750 (= C103), P754 (= P107), C755 (= C108), N772 (≠ V125), C789 (= C142), Y791 (= Y144), V793 (≠ A146), R794 (= R147), K840 (= K158), C841 (= C159), F843 (= F161), C844 (= C162), T869 (≠ P172), C871 (= C174), C875 (= C178), I880 (≠ R183)

7b04A of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.
34% identity, 51% coverage: 94:220/250 of query aligns to 168:305/409 of 7b04A

query
sites
7b04A

Y

F

M

Y

L

L

P
x
Q

R

R

L
x
I

C
|
C

N
|
N

H
|
H

C
|
C

E

T

D

Y

P
|
P

P

G

C
|
C

I

L

P

A

V

A

C
|
C

P

P

T
x
R

G

K

A

A

T
x
I

F

Y

Q

K

R

R

R

K

-

E

D

D

G

G

I

I

V

V

V

L

V

I

D

D

N

Q

T

K

V

R

C
|
C

V
x
R

G
|
G

C
x
Y

A
x
R

Y
x
K

C
|
C

V

V

Q

E

A

Q

C
|
C

P

P

Y

Y

D

K

A

K

R
x
P

F

M

I

Y

N

R

H

G

E

L

T

T

Q

R

T

V

A
x
S

D

E

K
|
K

C
|
C

T

I

F
x
A

C
|
C

V

Y

H

P

R

R

V

I

E

E

A

G

G

R

-

D

-

S

-

L

-

T

-

D

-

G

-

R

-

P

L

M

L

E

P
x
T

A
x
R

C
|
C

V

M

E

S

T

A

C
|
C

V
|
V

G

G

G

Q

A
x
I

R
|
R

I

L

F

Q

G

G

D

F

L

L

N

D

D

D

-

N

P

P

D

K

S

N

A

P

V

I

A

T

T

W

L

L

V

I

R

R

E

H

E

Q

N

K

P

I

K

A

V

L

-

P

L

L

K

Y

P

P

E

Q

Q

F

G

G

T

T

Q

E

P

P

R

N

V

I

F

Y

Y

Y

L

I

binding fe3-s4 cluster: C186 (= C112), I191 (≠ T117), C207 (= C132), R208 (≠ V133), G209 (= G134), Y210 (≠ C135), R211 (≠ A136), K212 (≠ Y137), C213 (= C138), S231 (≠ A156)
binding protoporphyrin ix containing fe: R188 (≠ T114), R208 (≠ V133), Y210 (≠ C135)
binding iron/sulfur cluster: Q171 (≠ P97), I173 (≠ L99), C174 (= C100), N175 (= N101), H176 (= H102), C177 (= C103), P180 (= P106), C182 (= C108), C217 (= C142), P222 (≠ R147), K233 (= K158), C234 (= C159), A236 (≠ F161), C237 (= C162), T255 (≠ P172), R256 (≠ A173), C257 (= C174), C261 (= C178), V262 (= V179), I265 (≠ A182), R266 (= R183)

Sites not aligning to the query:

binding iron/sulfur cluster: 34, 35, 36, 37, 38, 40, 44, 48, 59, 60, 62

8cm6D W-formate dehydrogenase c872a from desulfovibrio vulgaris - with formamide (see paper)
31% identity, 56% coverage: 48:187/250 of query aligns to 4:165/214 of 8cm6D

query
sites
8cm6D

M
x
F

V

F

V

V

D

D

V

L

R

S

K

R

C
|
C

V
x
T

G
x
A

C
|
C

Q
x
R

A

G

C
|
C

T

Q

V

I

A

A

C
|
C

I

K

M

Q

E

W

N
x
K

D

N

V

L

P

P

E

A

N

E

S

E

F

T

R

R

T

N

I

T

-

G

-

S

-

H

-

Q

-

N

-

P

-

D

-

L

-

S

-

Y

-

V

-

T

V

L

S
x
K

T

T

Y

V

E

R

V

F

T

T

E

E

Q

K

G

S

K
x
R

A

K

G

G

S
x
P

-

G

-

I

-

D

-

W

Y

L

M

F

L

F

P

P

R

E

L

Q

C
|
C

N
x
R

H

H

C
|
C

E

V

D

E

P
|
P

C
|
C

-

K

-

G

-

Q

I

A

P

D

V

V

C

D

P

L

T

E

G

G

A

A

T

V

F

V

Q

K

R

D

R

E

D

T

-

T

-

G

G

A

I
x
V

V

L

V

F

V

T

D

E

N

L

T

T

V

A

C

K

V

V

G

D

C

G

A

E

Y

S

C

V

V

R

Q

S

A

A

C
|
C

P

P

Y

Y

D

D

A
x
I

R
x
P

F

R

I

I

N

D

H

P

E

V

T

T

Q

K

T

R

A

L

D

S

K
|
K

C
|
C

T
x
D

F
x
M

C
|
C

V

N

H

D

R

R

V

V

E

Q

A

N

G

G

L

L

P

P

A

A

C
|
C

V

V

E

K

T

T

C
|
C

V
x
P

G
x
T

G

G

A
x
T

R
x
M

I

N

F

F

G

G

D

D

binding formamide: R59 (≠ K90), P62 (≠ S93)
binding iron/sulfur cluster: F4 (≠ M48), C11 (= C55), T12 (≠ V56), A13 (≠ G57), C14 (= C58), R15 (≠ Q59), C17 (= C61), C21 (= C65), K25 (≠ N69), K50 (≠ S81), C73 (= C100), R74 (≠ N101), C76 (= C103), P79 (= P106), P80 (= P107), C81 (= C108), V102 (≠ I124), C120 (= C142), I124 (≠ A146), P125 (≠ R147), K136 (= K158), C137 (= C159), D138 (≠ T160), M139 (≠ F161), C140 (= C162), C152 (= C174), C156 (= C178), P157 (≠ V179), T158 (≠ G180), T160 (≠ A182), M161 (≠ R183)

8bqgB W-formate dehydrogenase from desulfovibrio vulgaris - soaking with formate 1 min (see paper)
31% identity, 56% coverage: 48:187/250 of query aligns to 4:165/214 of 8bqgB

query
sites
8bqgB

M
x
F

V

F

V

V

D

D

V

L

R

S

K

R

C
|
C

V
x
T

G
x
A

C
|
C

Q
x
R

A

G

C
|
C

T

Q

V

I

A

A

C
|
C

I

K

M

Q

E

W

N
x
K

D

N

V

L

P

P

E

A

N

E

S

E

F

T

R

R

T

N

I

T

-

G

-

S

-

H

-

Q

-

N

-

P

-

D

-

L

-

S

-

Y

-

V

-

T

V

L

S
x
K

T

T

Y

V

E

R

V

F

T

T

E

E

Q

K

G

S

K

R

A

K

G

G

S

P

-

G

-

I

-

D

-

W

Y

L

M

F

L

F

P

P

R

E

L

Q

C
|
C

N
x
R

H

H

C
|
C

E

V

D

E

P

P

P
|
P

C
|
C

-

K

-

G

-

Q

I

A

P

D

V

V

C

D

P

L

T

E

G

G

A

A

T

V

F

V

Q

K

R

D

R

E

D

T

-

T

-

G

G

A

I
x
V

V

L

V

F

V

T

D

E

N

L

T

T

V

A

C

K

V

V

G

D

C

G

A

E

Y

S

C

V

V

R

Q

S

A

A

C
|
C

P

P

Y

Y

D

D

A
x
I

R
x
P

F

R

I

I

N

D

H

P

E

V

T

T

Q

K

T

R

A

L

D

S

K
|
K

C
|
C

T

D

F
x
M

C
|
C

V

N

H

D

R

R

V

V

E

Q

A

N

G

G

L

L

P

P

A

A

C
|
C

V

V

E

K

T

T

C
|
C

V
x
P

G
x
T

G

G

A
x
T

R
x
M

I

N

F

F

G

G

D

D

binding iron/sulfur cluster: F4 (≠ M48), C11 (= C55), T12 (≠ V56), A13 (≠ G57), C14 (= C58), R15 (≠ Q59), C17 (= C61), C21 (= C65), K25 (≠ N69), K50 (≠ S81), C73 (= C100), R74 (≠ N101), C76 (= C103), P80 (= P107), C81 (= C108), V102 (≠ I124), C120 (= C142), I124 (≠ A146), P125 (≠ R147), K136 (= K158), C137 (= C159), M139 (≠ F161), C140 (= C162), C152 (= C174), C156 (= C178), P157 (≠ V179), T158 (≠ G180), T160 (≠ A182), M161 (≠ R183)

1h0hB Tungsten containing formate dehydrogenase from desulfovibrio gigas (see paper)
28% identity, 62% coverage: 48:201/250 of query aligns to 4:179/214 of 1h0hB

query
sites
1h0hB

M
x
F

V

F

V

V

D

D

V

T

R

T

K

R

C
|
C

V
x
T

G
x
A

C
|
C

Q
x
R

A

G

C
|
C

T

Q

V

V

A

A

C
|
C

I

K

-

Q

-

W

-
x
H

-

G

-

N

-

P

-

A

-

T

-

P

-

T

-

E

-

N

-

T

-

G

M

F

E

H

N

Q

D

N

V

P

P

P

E

D

N

F

S

N

F

F

R

H

T

T

-

Y

-
x
K

I

L

V

V

S

R

T

M

Y

H

E

E

V

Q

T

E

E

I

Q

D

G

G

K

R

A

I

G

D

S

W

Y

L

M

F

L

F

P

P

R

D

L
x
Q

C
|
C

N
x
R

H

H

C
|
C

E

I

D

A

P

P

P
|
P

C
|
C

I

-

P

-

V

-

C

-

P

K

T

A

G

T

A

A

T

D

F

M

Q

E

R

D

R

E

D

S

G

A

I

I

V

I

V

H

V

D

D

D

N

A

T

T

V

G

C

C

V
|
V

-

L

-

F

-

T

-

P

-

K

-

T

-

K

-

D

-

L

-

E

G

D

C

Y

A

E

Y

S

C

V

V

I

Q

S

A

A

C
|
C

P

P

Y

Y

D

D

A

V

R
x
P

F

R

I

K

N

V

H

A

E

E

T

S

Q

N

T

Q

A

M

D

A

K
|
K

C
|
C

T
x
D

F
x
M

C
|
C

V

I

H

D

R

R

V

I

E

T

A

N

G

G

L

L

L

R

P

P

A

A

C
|
C

V

V

E

T

T

S

C
|
C

V
x
P

G

T

G

G

A
|
A

R

M

I

N

F

F

G

G

D

D

L

L

N

S

D

E

P

M

D

E

S

A

A

M

V

A

A

S

T

A

L

R

V

L

R

A

E

E

binding iron/sulfur cluster: F4 (≠ M48), C11 (= C55), T12 (≠ V56), A13 (≠ G57), C14 (= C58), R15 (≠ Q59), C17 (= C61), C21 (= C65), H25 (vs. gap), K50 (vs. gap), Q71 (≠ L99), C72 (= C100), R73 (≠ N101), C75 (= C103), P79 (= P107), C80 (= C108), V101 (= V133), C120 (= C142), P125 (≠ R147), K136 (= K158), C137 (= C159), D138 (≠ T160), M139 (≠ F161), C140 (= C162), C152 (= C174), C156 (= C178), P157 (≠ V179), A160 (= A182)

Q8GC87 Formate dehydrogenase subunit beta; FDH subunit beta; Formate dehydrogenase small subunit from Megalodesulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759) (Desulfovibrio gigas) (see paper)
28% identity, 62% coverage: 48:201/250 of query aligns to 5:180/215 of Q8GC87

query
sites
Q8GC87

M

F

V

F

V

V

D

D

V

T

R

T

K

R

C
|
C

V

T

G

A

C
|
C

Q

R

A

G

C
|
C

T

Q

V

V

A

A

C
|
C

I

K

-

Q

-

W

-

H

-

G

-

N

-

P

-

A

-

T

-

P

-

T

-

E

-

N

-

T

-

G

M

F

E

H

N

Q

D

N

V

P

P

P

E

D

N

F

S

N

F

F

R

H

T

T

-

Y

-

K

I

L

V

V

S

R

T

M

Y

H

E

E

V

Q

T

E

E

I

Q

D

G

G

K

R

A

I

G

D

S

W

Y

L

M

F

L

F

P

P

R

D

L

Q

C
|
C

N

R

H

H

C
|
C

E

I

D

A

P

P

C
|
C

I

-

P

-

V

-

C

-

P

K

T

A

G

T

A

A

T

D

F

M

Q

E

R

D

R

E

D

S

G

A

I

I

V

I

V

H

V

D

D

D

N

A

T

T

V

G

C

C

V

V

-

L

-

F

-

T

-

P

-

K

-

T

-

K

-

D

-

L

-

E

G

D

C

Y

A

E

Y

S

C

V

V

I

Q

S

A

A

C
|
C

P

P

Y

Y

D

D

A

V

R

P

F

R

I

K

N

V

H

A

E

E

T

S

Q

N

T

Q

A

M

D

A

K

K

C
|
C

T

D

F

M

C
|
C

V

I

H

D

R

R

V

I

E

T

A

N

G

G

L

L

L

R

P

P

A

A

C
|
C

V

V

E

T

T

S

C
|
C

V

P

G

T

G

G

A

A

R

M

I

N

F

F

G

G

D

D

L

L

N

S

D

E

P

M

D

E

S

A

A

M

V

A

A

S

T

A

L

R

V

L

R

A

E

E

C12 (= C55) binding
C15 (= C58) binding
C18 (= C61) binding
C22 (= C65) binding
C73 (= C100) binding
C76 (= C103) binding
C81 (= C108) binding
C121 (= C142) binding
C138 (= C159) binding
C141 (= C162) binding
C153 (= C174) binding
C157 (= C178) binding

Query Sequence

>AZOBR_RS23550 AZOBR_RS23550 tetrathionate reductase subunit B
MDRSRRNFCLGAGAATIGAATVAAMPAAAAPSAAPLRRDGNPAHRWAMVVDVRKCVGCQA
CTVACIMENDVPENSFRTIVSTYEVTEQGKAGSYMLPRLCNHCEDPPCIPVCPTGATFQR
RDGIVVVDNTVCVGCAYCVQACPYDARFINHETQTADKCTFCVHRVEAGLLPACVETCVG
GARIFGDLNDPDSAVATLVREENPKVLKPEQGTQPRVFYLGLDPRFQGKVDGTPTLWRPS
RETHAQKEHA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory