Comparing AZOBR_RS25485 FitnessBrowser__azobra:AZOBR_RS25485 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
48% identity, 97% coverage: 1:230/238 of query aligns to 6:237/240 of 1ji0A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 97% coverage: 1:230/238 of query aligns to 4:252/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 97% coverage: 1:230/238 of query aligns to 4:252/253 of 1g9xB
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
37% identity, 98% coverage: 2:235/238 of query aligns to 3:238/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
37% identity, 98% coverage: 2:235/238 of query aligns to 3:238/238 of 6s8gA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
32% identity, 97% coverage: 1:230/238 of query aligns to 2:234/240 of 6mjpA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
37% identity, 96% coverage: 2:230/238 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
37% identity, 96% coverage: 2:230/238 of query aligns to 3:234/234 of 4p31A
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
37% identity, 96% coverage: 2:230/238 of query aligns to 3:234/235 of 6mhzA
6mbnA Lptb e163q in complex with atp (see paper)
36% identity, 98% coverage: 2:235/238 of query aligns to 4:239/241 of 6mbnA
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
36% identity, 96% coverage: 2:229/238 of query aligns to 3:233/233 of 6b8bA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 90% coverage: 1:214/238 of query aligns to 1:218/240 of 4ymuJ
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
30% identity, 93% coverage: 1:222/238 of query aligns to 3:229/230 of 6z4wA
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
30% identity, 93% coverage: 1:222/238 of query aligns to 3:229/229 of 6z67B
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 90% coverage: 10:224/238 of query aligns to 26:240/378 of P69874
Sites not aligning to the query:
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
34% identity, 74% coverage: 14:188/238 of query aligns to 20:199/226 of 5xu1B
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
28% identity, 94% coverage: 2:224/238 of query aligns to 11:244/257 of P0AAH0
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
28% identity, 93% coverage: 1:221/238 of query aligns to 2:226/241 of 4u00A
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
26% identity, 95% coverage: 1:225/238 of query aligns to 4:234/501 of P04983
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
32% identity, 80% coverage: 1:191/238 of query aligns to 1:196/222 of P0A9R7
>AZOBR_RS25485 FitnessBrowser__azobra:AZOBR_RS25485
MLEIQDLVTAYDGIRALRGVTLTVPAGAMVALIGPNGAGKSTLLNSVSGVVTPASGRIRF
DGAEIAGLPAHRVARRGLLQVPEGRQILGPLSVEENLRLGRLAAGTRGTADIDEVYALFP
ILAERRRQEGGSLSGGQQQMLAIGRALMGRPRLLMLDEPSLGLSPLMAAQVFAALETLRR
SGLTILLVEQNARRALDATGHAYVLEQGRIVHQGPSGALARDPAVVRHYLPGDDLPDV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory