SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS25900 FitnessBrowser__azobra:AZOBR_RS25900 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

5iaiA Crystal structure of abc transporter solute binding protein arad_9887 from agrobacterium radiobacter k84, target efi-510945 in complex with ribitol
22% identity, 76% coverage: 58:502/584 of query aligns to 1:389/399 of 5iaiA

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D

Query Sequence

>AZOBR_RS25900 FitnessBrowser__azobra:AZOBR_RS25900
MRALYLASASAAALLLSSAPAFADIEAAKRWIDSEFQPSTLSKEDQLKEMQWFIDAAKPF
AGMEINVVSETITTHEYEARTLARAFSEITGIKLRHDLIQEGDVVEKIQTQMQSGKNIYD
AWINDSDLIGTHFRYKQVVPLTDWMDGEGKDVTLPTLDVKDFIGTSFTTAPDGKLYQLPD
QQFANLYWFRYDWFTNPDIKAKFKAKYGYDLGVPVNWSAYEDIAEFFTNDVKEIDGVKVY
GHMDYGKKDPSLGWRFTDAWLSMAGNGDKGLPNGKPVDEWGIRMEGCSPVGSSIERGGDT
NGPAAVYSVTKYVEWLKKYAPPQAAGMTFSESGPVPAQGNVAQQMFWYTAFTADMVKDGL
PVVNADGTPKWRMAPSPKGAYWKDGMKLGYQDAGSWTLLKSTPVDRRKAAWLYAQFTMSK
SVSLKKSHVGLTFIRESDIWDKSFTERAPKLGGLVEFYRSPARVQWTPTGVNVPDYPKLA
QLWWQNIGDASSGAKTPQAAMDALAAAQDSVMERLERSGVQGECGPKLNKKESAEFWFAK
AEKDGTTAPQRKLSNEKPKGETVDYDQLIKSWPASPPKKAAMVQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory