SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS26410 FitnessBrowser__azobra:AZOBR_RS26410 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
32% identity, 95% coverage: 8:212/216 of query aligns to 4:214/215 of 4ymtC

query
sites
4ymtC
D
 
D
F
 
F
L
 
L
S
 
S
L
 
M
-
 
V
-
 
K
-
 
Y
-
 
T
-
 
P
-
 
L
-
 
F
L
 
I
S
 
S
A
 
G
L
 
L
Q
 
I
W
 
M
T
 
T
G
 
L
V
 
K
L
 
L
V
 
T
L
 
F
I
 
L
A
 
A
L
 
V
A
 
T
F
 
I
G
 
G
A
 
V
P
 
L
L
 
M
A
 
G
L
 
L
G
 
F
L
 
I
A
 
A
L
 
L
M
 
M
R
 
K
T
 
M
S
 
S
A
 
S
R
 
I
R
 
K
A
 
P
L
 
I
R
 
K
W
 
L
T
 
V
A
 
A
T
 
S
A
 
S
F
 
Y
L
 
I
Q
 
E
L
 
V
V
 
I
Q
 
R
G
 
G
V
 
T
P
|
P
L
|
L
L
 
L
G
 
V
L
 
Q
L
 
L
M
 
L
F
 
L
F
 
I
Y
 
Y
F
 
N
G
 
G
M
 
L
P
 
M
V
 
Q
F
 
F
L
 
-
G
 
G
V
 
M
E
 
N
M
 
I
P
 
P
P
 
A
L
 
F
V
 
T
A
 
A
V
 
G
G
 
V
I
 
S
A
 
A
M
 
L
T
 
A
V
 
I
Y
x
N
T
 
S
A
 
S
S
 
A
F
x
Y
L
 
V
G
 
A
E
 
E
I
 
I
W
 
I
R
 
R
G
 
A
G
 
G
I
 
I
E
 
Q
A
 
A
V
 
V
K
 
D
H
 
P
E
 
G
Q
 
Q
W
 
N
E
 
E
A
 
A
A
 
A
A
 
R
C
 
S
L
 
L
G
 
G
L
 
M
S
 
T
T
 
H
W
 
A
H
 
M
Q
 
A
F
 
M
R
 
R
Y
 
Y
V
 
V
I
 
I
A
 
I
P
 
P
Q
 
Q
A
 
A
F
 
I
R
 
K
M
 
N
A
 
I
L
 
L
P
 
P
P
 
A
T
 
L
V
 
G
G
 
N
F
x
E
L
 
F
V
 
I
Q
 
V
L
x
M
I
 
L
K
|
K
G
x
E
T
 
S
S
 
A
L
 
I
A
 
V
S
 
S
I
 
V
V
 
I
G
 
G
F
 
F
V
 
A
E
 
D
L
 
L
A
 
T
R
 
R
A
 
Q
G
 
A
Q
 
D
L
 
I
V
 
I
S
 
Q
A
 
S
A
 
V
T
 
T
F
 
Y
Q
 
R
P
 
Y
L
 
F
L
 
E
V
 
P
Y
 
Y
S
 
I
I
 
I
V
 
I
A
 
A
A
 
A
I
 
I
Y
 
Y
F
 
F
A
 
V
A
 
M
C
 
T
L
 
L
P
 
T
L
 
F
T
 
S
L
 
K
W
 
L
A
 
L
R
 
S
S
 
L
L
 
F
E
 
E
A
 
R
R
 
R
L
 
L

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
32% identity, 95% coverage: 8:212/216 of query aligns to 4:214/214 of 4ymwC

query
sites
4ymwC
D
 
D
F
 
F
L
 
L
S
 
S
L
 
M
-
 
V
-
 
K
-
 
Y
-
 
T
-
 
P
-
 
L
-
 
F
L
 
I
S
 
S
A
 
G
L
 
L
Q
 
I
W
 
M
T
 
T
G
 
L
V
 
K
L
 
L
V
 
T
L
 
F
I
 
L
A
 
A
L
 
V
A
 
T
F
 
I
G
 
G
A
 
V
P
 
L
L
 
M
A
 
G
L
 
L
G
 
F
L
 
I
A
 
A
L
 
L
M
 
M
R
 
K
T
 
M
S
 
S
A
 
S
R
 
I
R
 
K
A
 
P
L
 
I
R
 
K
W
 
L
T
 
V
A
 
A
T
 
S
A
 
S
F
 
Y
L
 
I
Q
 
E
L
 
V
V
 
I
Q
 
R
G
 
G
V
 
T
P
 
P
L
 
L
L
 
L
G
 
V
L
 
Q
L
 
L
M
 
L
F
 
L
F
 
I
Y
 
Y
F
 
N
G
 
G
M
 
L
P
 
M
V
 
Q
F
 
F
L
 
-
G
 
G
V
 
M
E
 
N
M
 
I
P
 
P
P
 
A
L
 
F
V
 
T
A
 
A
V
 
G
G
 
V
I
 
S
A
 
A
M
 
L
T
 
A
V
 
I
Y
x
N
T
 
S
A
 
S
S
 
A
F
x
Y
L
 
V
G
 
A
E
 
E
I
 
I
W
 
I
R
 
R
G
 
A
G
 
G
I
 
I
E
 
Q
A
 
A
V
 
V
K
 
D
H
 
P
E
 
G
Q
 
Q
W
 
N
E
 
E
A
 
A
A
 
A
A
 
R
C
 
S
L
 
L
G
 
G
L
 
M
S
 
T
T
 
H
W
 
A
H
 
M
Q
 
A
F
 
M
R
 
R
Y
 
Y
V
 
V
I
 
I
A
 
I
P
 
P
Q
 
Q
A
 
A
F
 
I
R
 
K
M
 
N
A
 
I
L
 
L
P
 
P
P
 
A
T
 
L
V
 
G
G
 
N
F
x
E
L
 
F
V
 
I
Q
 
V
L
 
M
I
 
L
K
 
K
G
x
E
T
 
S
S
 
A
L
 
I
A
 
V
S
 
S
I
 
V
V
 
I
G
 
G
F
 
F
V
 
A
E
 
D
L
 
L
A
 
T
R
 
R
A
 
Q
G
 
A
Q
 
D
L
 
I
V
 
I
S
 
Q
A
 
S
A
 
V
T
 
T
F
 
Y
Q
 
R
P
 
Y
L
 
F
L
 
E
V
 
P
Y
 
Y
S
 
I
I
 
I
V
 
I
A
 
A
A
 
A
I
 
I
Y
 
Y
F
 
F
A
 
V
A
 
M
C
 
T
L
 
L
P
 
T
L
 
F
T
 
S
L
 
K
W
 
L
A
 
L
R
 
S
S
 
L
L
 
F
E
 
E
A
 
R
R
 
R
L
 
L

Query Sequence

>AZOBR_RS26410 FitnessBrowser__azobra:AZOBR_RS26410
MRSFSLADFLSLLSALQWTGVLVLIALAFGAPLALGLALMRTSARRALRWTATAFLQLVQ
GVPLLGLLMFFYFGMPVFLGVEMPPLVAVGIAMTVYTASFLGEIWRGGIEAVKHEQWEAA
ACLGLSTWHQFRYVIAPQAFRMALPPTVGFLVQLIKGTSLASIVGFVELARAGQLVSAAT
FQPLLVYSIVAAIYFAACLPLTLWARSLEARLNGAR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory