Comparing AZOBR_RS26885 FitnessBrowser__azobra:AZOBR_RS26885 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 4 hits to proteins with known functional sites (download)
1b4uB Protocatechuate 4,5-dioxygenase (ligab) in complex with protocatechuate (pca) (see paper)
47% identity, 99% coverage: 2:277/280 of query aligns to 1:278/298 of 1b4uB
3wr9A Crystal structure of the anaerobic desb-gallate complex (see paper)
44% identity, 99% coverage: 2:277/280 of query aligns to 1:274/416 of 3wr9A
Sites not aligning to the query:
3wkuA Crystal structure of the anaerobic desb-gallate complex (see paper)
44% identity, 99% coverage: 2:277/280 of query aligns to 1:269/407 of 3wkuA
Sites not aligning to the query:
P0ABR9 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase; 3-carboxyethylcatechol 2,3-dioxygenase; EC 1.13.11.16 from Escherichia coli (strain K12) (see paper)
36% identity, 56% coverage: 39:194/280 of query aligns to 33:180/314 of P0ABR9
Sites not aligning to the query:
>AZOBR_RS26885 FitnessBrowser__azobra:AZOBR_RS26885
MAKIVGGVTTSHIPAIGNAIANELFEDPYWKPFFDGYPKAREWLAEVKPDVAIVVYNDHG
LNFFLDKMPTFSIGAAPEYQNKDEGWGLKPLPPYPGDPELSWHIIESLVNDEFDICSCQE
MAVDHGFTVPMALLWPDQTQRPVRTIPVAVNTVQHPLPTPARCLKLGEAIGRAVASYPKD
LKVVVLGTGGLSHQLDGERAGFINKDFDLMCLEKIVDEPEALAKYSIHDLVRLAGAQGAE
LILWLIMRGALGRKVSKVHSNYHIPISNTGAGLLVLESAA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory