SitesBLAST
Comparing AZOBR_RS27480 FitnessBrowser__azobra:AZOBR_RS27480 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 13 hits to proteins with known functional sites (download)
5y6qB Crystal structure of an aldehyde oxidase from methylobacillus sp. Ky4400 (see paper)
44% identity, 99% coverage: 1:329/333 of query aligns to 1:327/330 of 5y6qB
- binding flavin-adenine dinucleotide: I26 (≠ Y28), A28 (= A30), G29 (= G31), G30 (= G32), T31 (= T33), T32 (≠ N34), Q33 (≠ L35), A97 (= A99), A98 (= A100), I102 (≠ L104), A106 (= A108), T107 (= T109), G110 (= G112), N111 (= N113), R113 (≠ L115), Q114 (= Q116), G164 (= G167), D165 (= D168), I213 (= I215), I214 (≠ V216), K232 (= K234), F241 (= F243)
- binding iron/sulfur cluster: C118 (= C120), Y121 (≠ F123), C130 (= C133), N131 (= N134), C139 (= C142), A141 (= A144), C158 (= C161), I159 (≠ N162), A160 (= A163)
5g5gB Escherichia coli periplasmic aldehyde oxidase (see paper)
46% identity, 98% coverage: 1:325/333 of query aligns to 1:311/316 of 5g5gB
- binding flavin-adenine dinucleotide: K26 (≠ R27), F27 (≠ Y28), A29 (= A30), G30 (= G31), G31 (= G32), T32 (= T33), N33 (= N34), L34 (= L35), G98 (≠ A99), A99 (= A100), L103 (= L104), A107 (= A108), T108 (= T109), A110 (≠ G111), G111 (= G112), N112 (= N113), L114 (= L115), Q115 (= Q116), S163 (≠ G167), D164 (= D168), L212 (≠ I215), I213 (≠ V216), F239 (= F243)
- binding iron/sulfur cluster: C119 (= C120), C129 (= C133), N130 (= N134), K131 (= K135), C138 (= C142), H148 (≠ Q152), C157 (= C161), I158 (≠ N162), A159 (= A163)
P77324 Aldehyde oxidoreductase FAD-binding subunit PaoB; EC 1.2.99.6 from Escherichia coli (strain K12) (see paper)
46% identity, 98% coverage: 1:325/333 of query aligns to 1:311/318 of P77324
- 26:34 (vs. 27:35, 78% identical) binding
- T108 (= T109) binding
- C119 (= C120) binding
- C129 (= C133) binding
- C138 (= C142) binding
- C157 (= C161) binding
- D164 (= D168) binding
- I213 (≠ V216) binding
- K230 (= K234) binding
1rm6B Structure of 4-hydroxybenzoyl-coa reductase from thauera aromatica (see paper)
35% identity, 85% coverage: 8:289/333 of query aligns to 11:278/323 of 1rm6B
- binding flavin-adenine dinucleotide: P29 (≠ Y28), G31 (≠ A30), A32 (≠ G31), G33 (= G32), T34 (= T33), D35 (≠ N34), L36 (= L35), L53 (≠ I52), V101 (≠ A99), A102 (= A100), A110 (= A108), T111 (= T109), G114 (= G112), N115 (= N113), C117 (≠ L115), Q118 (= Q116), D162 (= D168), L207 (≠ V216), V231 (≠ Y241), D232 (≠ A242), F233 (= F243)
- binding iron/sulfur cluster: C122 (= C120), F124 (≠ Y122), C138 (= C133), C146 (= C142), H147 (≠ A143), V148 (≠ A144), C155 (= C161), Y156 (≠ N162), A157 (= A163)
O33820 4-hydroxybenzoyl-CoA reductase subunit beta; 4-HBCR subunit beta; EC 1.1.7.1 from Thauera aromatica (see paper)
35% identity, 85% coverage: 8:289/333 of query aligns to 11:278/324 of O33820
- 29:36 (vs. 28:35, 38% identical) binding
- T111 (= T109) binding
- N115 (= N113) binding
- Q118 (= Q116) binding
- D162 (= D168) binding
- K224 (= K234) binding
4zohB Crystal structure of glyceraldehyde oxidoreductase (see paper)
27% identity, 97% coverage: 6:328/333 of query aligns to 8:272/274 of 4zohB
- active site: Y256 (≠ F312)
- binding flavin-adenine dinucleotide: R28 (= R27), P29 (≠ Y28), A31 (= A30), G32 (= G31), G33 (= G32), H34 (≠ T33), S35 (≠ N34), L36 (= L35), H77 (≠ M76), I95 (≠ A99), G96 (≠ A100), V100 (≠ L104), T105 (= T109), G108 (= G112), S109 (≠ A144), S111 (≠ G146), A117 (≠ G167), D118 (= D168), L160 (≠ I215), V161 (= V216), D185 (≠ A242), F186 (= F243)
1n5wC Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
26% identity, 99% coverage: 4:333/333 of query aligns to 6:287/287 of 1n5wC
P19920 Carbon monoxide dehydrogenase medium chain; CO dehydrogenase subunit M; CO-DH M; EC 1.2.5.3 from Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) (Oligotropha carboxidovorans) (see 2 papers)
26% identity, 99% coverage: 4:333/333 of query aligns to 6:287/288 of P19920
7dqxE Crystal structure of xanthine dehydrogenase family protein
25% identity, 86% coverage: 1:288/333 of query aligns to 1:239/293 of 7dqxE
- binding flavin-adenine dinucleotide: K29 (≠ R27), I30 (≠ Y28), I31 (= I29), G33 (= G31), G34 (= G32), Q35 (≠ T33), S36 (≠ N34), L37 (= L35), H78 (≠ M76), I101 (≠ A99), A102 (= A100), I106 (≠ L104), G110 (≠ A108), T111 (= T109), G113 (= G111), G114 (= G112), S115 (≠ N113), A117 (≠ C161), A123 (≠ G167), E124 (≠ D168), I167 (≠ V216), Y193 (= Y241)
1ffuC Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava which lacks the mo-pyranopterin moiety of the molybdenum cofactor (see paper)
25% identity, 80% coverage: 4:270/333 of query aligns to 6:220/287 of 1ffuC
- binding flavin-adenine dinucleotide: K29 (≠ R27), L30 (≠ Y28), A32 (= A30), G33 (= G31), G34 (= G32), H35 (≠ T33), S36 (≠ N34), L37 (= L35), I54 (= I52), I101 (≠ A99), A102 (= A100), G110 (≠ A108), T111 (= T109), G114 (= G112), D115 (≠ N113), A117 (= A127), N123 (≠ S140), D124 (= D168), L161 (≠ I210), V166 (≠ I215), M167 (≠ V216), W193 (≠ F243)
Q0QLF4 Nicotinate dehydrogenase FAD-subunit; NDH; Nicotinic acid hydroxylase FAD-subunit; NAH; EC 1.17.1.5 from Eubacterium barkeri (Clostridium barkeri) (see paper)
24% identity, 80% coverage: 29:294/333 of query aligns to 30:248/296 of Q0QLF4
Sites not aligning to the query:
3hrdG Crystal structure of nicotinate dehydrogenase (see paper)
24% identity, 80% coverage: 29:294/333 of query aligns to 30:248/292 of 3hrdG
- binding flavin-adenine dinucleotide: A31 (= A30), G32 (= G31), G33 (= G32), T34 (= T33), D35 (≠ N34), F77 (≠ M76), V100 (≠ A99), G101 (≠ A100), I105 (≠ L104), T110 (= T109), G113 (= G112), N114 (= N113), S116 (≠ L115), T117 (≠ Q116), G122 (≠ C161), D123 (≠ N162), I168 (= I215), M169 (≠ V216)
Sites not aligning to the query:
1t3qC Crystal structure of quinoline 2-oxidoreductase from pseudomonas putida 86 (see paper)
29% identity, 33% coverage: 4:114/333 of query aligns to 6:115/285 of 1t3qC
- binding flavin-adenine dinucleotide: I29 (≠ Y28), A31 (= A30), G32 (= G31), G33 (= G32), Q34 (≠ T33), S35 (≠ N34), L36 (= L35), V100 (≠ A99), A101 (= A100), V105 (≠ L104), T110 (= T109), G113 (= G112), S114 (≠ N113)
Sites not aligning to the query:
Query Sequence
>AZOBR_RS27480 FitnessBrowser__azobra:AZOBR_RS27480
MKPLSYVRARTAREAIEAFVAAGESARYIAGGTNLYDLMKLGIEKPAHLIDIADLDGANR
IDTDGDRLFFGGAALMADVAEHPVVRDDYPVLAESLSKAASQQLRNMATVGGNLLQRTRC
PYFRNGANGAYPCNKREPGSGCAAIGGLDRSQAVLGASAACNAVSPGDWPVALMAMDAAI
ELQGLDGTRVIPIAELYRPPSRTPHLEFTIGREEIVTGISVPKTTAGRTSTYLKVRDRES
YAFALVSAAVALEMDGDRVRQAHVALGGVATVPWRARPAEALLRGETLDRERAQEAARAA
FAEARAGRHNAFKIELGARTLADAIITAGSKSK
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory