Comparing AZOBR_RS27535 FitnessBrowser__azobra:AZOBR_RS27535 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
1ordA Crystallographic structure of a plp-dependent ornithine decarboxylase from lactobacillus 30a to 3.1 angstroms resolution (see paper)
44% identity, 82% coverage: 126:771/785 of query aligns to 92:713/730 of 1ordA
1c4kA Ornithine decarboxylase mutant (gly121tyr) (see paper)
43% identity, 82% coverage: 126:771/785 of query aligns to 90:711/728 of 1c4kA
6q6iA Lysine decarboxylase a from pseudomonas aeruginosa
38% identity, 98% coverage: 6:773/785 of query aligns to 5:744/749 of 6q6iA
2vycA Crystal structure of acid induced arginine decarboxylase from e. Coli (see paper)
33% identity, 94% coverage: 19:758/785 of query aligns to 14:740/755 of 2vycA
P28629 Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli (strain K12) (see paper)
33% identity, 94% coverage: 19:758/785 of query aligns to 14:740/755 of P28629
5xx1G Crystal structure of arginine decarboxylase (adia) from salmonella typhimurium (see paper)
33% identity, 94% coverage: 19:758/785 of query aligns to 15:720/735 of 5xx1G
6q7lA Inducible lysine decarboxylase (see paper)
32% identity, 96% coverage: 26:778/785 of query aligns to 19:711/711 of 6q7lA
3n75A X-ray crystal structure of the escherichia coli inducible lysine decarboxylase ldci (see paper)
32% identity, 96% coverage: 26:778/785 of query aligns to 19:711/711 of 3n75A
>AZOBR_RS27535 FitnessBrowser__azobra:AZOBR_RS27535
MDFFRRFSFLVCAPAFDPDELEGVRVQQIVAEVERLGFEVVRTRRVEDAELAIRTDAAIG
CMIVDWGKRGLEGKPASLIALARKRGLEMPIILLVRRQRLENIPVDVLNQVDGYVFLAEE
TPEFIAKNLVSRLKQYAETLKTPFFGELVDYAEEGNQLWTCPGHNGGIFYSRSPIGRIFV
EHLGEAVFRDDIDNSVLEMGDLLVHEGPALKAQKEAAKIFGAERTYFVLNGTSASNKIVL
SALVAEDDLVLFDRNNHKAAHHGGLFLGGGIPVFLETDRNAYGLIGPIDHEALDEERIRA
KIRGNPLVKDPDAWKRERPFRAAVIQQCSYDGTIYSAETILAKIGHLCDYILFDEAWAGF
LKFHPLFKGRFAMGLDGLHDGHPGIIATQSTHKQLASFSQASQIHVKDSHIRGQRRRVEH
RRFNETFLLHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGVELRKKIRAIRREF
EERESAPARRWFFDPFVPDRVSFDGAEIAWEEVPTDALASDVRHWVFKPGAHWHGFRHVA
AGYAMTDPNKLTLLTPGFDRRTGAYEEHGIPAPVVAQYLRENRIVPEKNDLNSILFLLTP
GVESSKAGTLLSALVAFKRLHDDNALLEDVIPEFVARRPARYAGRRLRDLCAEMHGFYRE
RRTNELQRRMFRPDHLPEMVMPPREAVRRLVRNDVDYLPIDRIAGRVATTLFVVYPPGIA
TIVPGERLDERARPMIEYLQVFQEGANRFPGFDNEIQGLYRETEPDGSVRFYTYVVREDG
ADARR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory