Comparing AZOBR_RS29610 FitnessBrowser__azobra:AZOBR_RS29610 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
39% identity, 96% coverage: 6:218/221 of query aligns to 4:215/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
40% identity, 96% coverage: 6:217/221 of query aligns to 4:214/214 of 4ymwC
>AZOBR_RS29610 FitnessBrowser__azobra:AZOBR_RS29610
MGYEWQFAIILEYWPIFARGAITTLQITLLSSAIGLFIGLLVGVSRESSGVFLRSVTSVY
VEMIRATPALVQIVWLYYCFPIIFGYQLSAMTSIIIALGIHSGAYVSEIVRAGINAVDTG
QFLAAKSIGMNHFTALRRIILPQAGQKMIPPLINEFANLMKLTTLGSMIAVYELLQESNN
LIATTYRPLEVYTFLAIFFFIITYPWIWLSQRLERRLKMRA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory