SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS29610 FitnessBrowser__azobra:AZOBR_RS29610 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
39% identity, 96% coverage: 6:218/221 of query aligns to 4:215/215 of 4ymtC

query
sites
4ymtC
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K
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I
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M
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A
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S
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S
Y
 
Y
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I
E
 
E
M
 
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I
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G
T
 
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x
L
L
 
L
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V
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Q
I
 
L
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L
W
 
L
L
 
I
Y
 
Y
Y
 
N
C
 
G
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L
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-
I
 
M
I
 
Q
F
 
F
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G
Y
 
M
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N
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P
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M
 
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T
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A
I
 
G
I
 
V
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A
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L
G
 
A
I
 
I
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N
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A
Y
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Y
V
 
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A
E
 
E
I
 
I
V
 
I
R
 
R
A
 
A
G
 
G
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I
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Q
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A
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D
 
D
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P
G
 
G
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Q
F
 
N
L
 
E
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A
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L
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G
M
 
M
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A
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A
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I
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K
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A
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G
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N
E
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F
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I
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V
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x
M
M
 
L
K
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K
L
x
E
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S
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A
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I
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V
S
 
S
M
 
V
I
 
I
A
 
G
V
 
F
Y
 
A
E
 
D
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L
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E
 
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A
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D
N
 
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I
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Q
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E
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Y
 
Y
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I
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A
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A
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R
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L
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
40% identity, 96% coverage: 6:217/221 of query aligns to 4:214/214 of 4ymwC

query
sites
4ymwC
Q
 
D
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L

Query Sequence

>AZOBR_RS29610 FitnessBrowser__azobra:AZOBR_RS29610
MGYEWQFAIILEYWPIFARGAITTLQITLLSSAIGLFIGLLVGVSRESSGVFLRSVTSVY
VEMIRATPALVQIVWLYYCFPIIFGYQLSAMTSIIIALGIHSGAYVSEIVRAGINAVDTG
QFLAAKSIGMNHFTALRRIILPQAGQKMIPPLINEFANLMKLTTLGSMIAVYELLQESNN
LIATTYRPLEVYTFLAIFFFIITYPWIWLSQRLERRLKMRA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory