Comparing AZOBR_RS31240 FitnessBrowser__azobra:AZOBR_RS31240 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3uugA Crystal structure of the periplasmic sugar binding protein chve (see paper)
77% identity, 92% coverage: 30:358/358 of query aligns to 1:329/329 of 3uugA
3urmA Crystal structure of the periplasmic sugar binding protein chve (see paper)
77% identity, 92% coverage: 30:358/358 of query aligns to 1:329/329 of 3urmA
4wwhA Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
68% identity, 92% coverage: 31:358/358 of query aligns to 2:329/329 of 4wwhA
4ys6A Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
52% identity, 91% coverage: 34:358/358 of query aligns to 3:324/324 of 4ys6A
3ma0A Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
37% identity, 91% coverage: 34:357/358 of query aligns to 5:307/313 of 3ma0A
4ywhA Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
38% identity, 91% coverage: 33:358/358 of query aligns to 5:310/310 of 4ywhA
4rxuA Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
35% identity, 91% coverage: 34:357/358 of query aligns to 6:336/340 of 4rxuA
6s3tA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
27% identity, 86% coverage: 33:341/358 of query aligns to 14:370/374 of 6s3tA
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
27% identity, 86% coverage: 33:341/358 of query aligns to 12:368/373 of 6ruxA
8fxuA Thermoanaerobacter thermosaccharolyticum periplasmic glucose-binding protein glucose complex: badan conjugate attached at f17c (see paper)
27% identity, 78% coverage: 51:330/358 of query aligns to 23:298/310 of 8fxuA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
23% identity, 78% coverage: 33:313/358 of query aligns to 2:258/274 of 2ioyA
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
23% identity, 77% coverage: 69:343/358 of query aligns to 44:286/287 of 4yo7A
Sites not aligning to the query:
P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 4 papers)
25% identity, 67% coverage: 69:309/358 of query aligns to 64:298/332 of P0AEE5
Sites not aligning to the query:
P23905 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
26% identity, 65% coverage: 69:302/358 of query aligns to 64:291/332 of P23905
Sites not aligning to the query:
1gcaA The 1.7 angstroms refined x-ray structure of the periplasmic glucose(slash)galactose receptor from salmonella typhimurium (see paper)
26% identity, 65% coverage: 69:302/358 of query aligns to 41:268/309 of 1gcaA
Sites not aligning to the query:
2gbpA Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein (see paper)
25% identity, 67% coverage: 69:309/358 of query aligns to 41:275/309 of 2gbpA
Sites not aligning to the query:
3ga5A X-ray structure of glucose/galactose receptor from salmonella typhimurium in complex with (2r)-glyceryl-beta-d-galactopyranoside (see paper)
26% identity, 65% coverage: 69:302/358 of query aligns to 39:266/305 of 3ga5A
Sites not aligning to the query:
2qw1A Glucose/galactose binding protein bound to 3-o-methyl d-glucose (see paper)
25% identity, 67% coverage: 69:309/358 of query aligns to 40:274/305 of 2qw1A
5kwsA Crystal structure of galactose binding protein from yersinia pestis in the complex with beta d glucose
26% identity, 72% coverage: 69:327/358 of query aligns to 41:291/307 of 5kwsA
Sites not aligning to the query:
4z0nA Crystal structure of a periplasmic solute binding protein (ipr025997) from streptobacillus moniliformis dsm-12112 (smon_0317, target efi- 511281) with bound d-galactose
25% identity, 65% coverage: 79:312/358 of query aligns to 51:277/307 of 4z0nA
Sites not aligning to the query:
>AZOBR_RS31240 FitnessBrowser__azobra:AZOBR_RS31240
MSSSFTTTLAGMAVGVLALTVAAAPTLAQDKPTVGIAMPTKSSARWIDDGNNMVKQFQAK
GYKTDLQYAEDDIPNQLAQIETMVAKNSKVLVIAAIDGTTLTDVLQQAKDRGVKVIAYDR
LIRGSENVDYYATFDNFQVGVLQGSYIVDALGLKDGKGPFNIELFGGSPDDNNAYFFYNG
AMSVLQPHIDSGKLKVGSGQVGMDKVSTLRWDGATAQARMDNLLSAFYGNRRVDAVLSPY
DGISIGIISSLKGVGYGSPSQPMPVVTGQDAEVPSIKSILAGEQRATVFKDTRELARVTV
EMVDAVLGGGTPPVNDTKTYDNGKKVVPAYLLKPVSVDASNWKSTLVGSGYYTEAQFK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory