Comparing Ac3H11_104 FitnessBrowser__acidovorax_3H11:Ac3H11_104 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 98% coverage: 4:247/249 of query aligns to 4:254/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
32% identity, 98% coverage: 4:246/249 of query aligns to 4:253/253 of 1g9xB
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
32% identity, 98% coverage: 4:246/249 of query aligns to 6:238/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
30% identity, 99% coverage: 4:249/249 of query aligns to 2:238/240 of 6mjpA
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
31% identity, 97% coverage: 1:241/249 of query aligns to 1:235/501 of P04983
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
30% identity, 98% coverage: 5:247/249 of query aligns to 3:236/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
30% identity, 98% coverage: 5:247/249 of query aligns to 3:236/238 of 6s8gA
5x40A Structure of a cbio dimer bound with amppcp (see paper)
34% identity, 97% coverage: 1:242/249 of query aligns to 1:235/280 of 5x40A
6mbnA Lptb e163q in complex with atp (see paper)
29% identity, 98% coverage: 5:247/249 of query aligns to 4:237/241 of 6mbnA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
29% identity, 97% coverage: 5:246/249 of query aligns to 3:235/235 of 6mhzA
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
32% identity, 94% coverage: 1:235/249 of query aligns to 1:224/285 of 4yerA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 90% coverage: 16:238/249 of query aligns to 17:232/343 of P30750
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 93% coverage: 4:234/249 of query aligns to 1:223/240 of 4ymuJ
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
29% identity, 97% coverage: 5:245/249 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
29% identity, 97% coverage: 5:245/249 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
29% identity, 96% coverage: 5:244/249 of query aligns to 3:233/233 of 6b8bA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 95% coverage: 3:238/249 of query aligns to 1:227/241 of 4u00A
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
32% identity, 90% coverage: 16:238/249 of query aligns to 18:233/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 90% coverage: 16:238/249 of query aligns to 18:233/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 90% coverage: 16:238/249 of query aligns to 18:233/344 of 3tuiC
Sites not aligning to the query:
>Ac3H11_104 FitnessBrowser__acidovorax_3H11:Ac3H11_104
MNPILSVKGISVQFGALKAVQDVSFEAQPGKITAVIGPNGAGKSSLFNLISGAIRPSSGA
VRFDGEDVTGRAPHQLLRYGLSRSFQITNLFFELPVRENLRLAAQFLEQGRGLFRPLARS
QTAAARVDELLEQFDLRNKADELAGYLSHGEQRRLEIAVSLASRPRMLLLDEPTQGMSHG
DTRETESLIRGLSHNHGLSILLVEHDVDLVMQLSDFVVVMHQGQKLAEGTPAQVRANPAV
QAAYFGEKL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory