Comparing Ac3H11_1227 TRAP-type C4-dicarboxylate transport system, periplasmic component to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate (see paper)
47% identity, 89% coverage: 26:323/334 of query aligns to 5:302/310 of 7bcrA
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate (see paper)
47% identity, 89% coverage: 26:323/334 of query aligns to 5:302/310 of 7bcpA
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate (see paper)
47% identity, 89% coverage: 26:323/334 of query aligns to 5:302/310 of 7bcoA
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid (see paper)
47% identity, 89% coverage: 26:323/334 of query aligns to 5:302/310 of 7bcnA
7bbrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
47% identity, 89% coverage: 26:323/334 of query aligns to 6:303/310 of 7bbrA
4pddA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
40% identity, 90% coverage: 28:329/334 of query aligns to 4:303/303 of 4pddA
4pdhA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_1871, target efi-510164) bound to d- erythronate (see paper)
37% identity, 90% coverage: 25:323/334 of query aligns to 1:297/301 of 4pdhA
4pakA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to (r)- pantoic acid (see paper)
36% identity, 91% coverage: 23:325/334 of query aligns to 2:302/304 of 4pakA
4p9kA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to d- erythronate with residual density suggestive of superposition with copurified alternative ligand. (see paper)
36% identity, 91% coverage: 23:325/334 of query aligns to 1:301/303 of 4p9kA
4xeqB Crystal structure of a trap periplasmic solute binding protein from desulfovibrio vulgaris (deval_0042, target efi-510114) bound to copurified (r)-pantoic acid
37% identity, 84% coverage: 28:307/334 of query aligns to 4:280/304 of 4xeqB
4p8bA Crystal structure of a trap periplasmic solute binding protein from ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate) (see paper)
35% identity, 87% coverage: 39:329/334 of query aligns to 16:313/314 of 4p8bA
4x8rA Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with bound glucuronate
34% identity, 87% coverage: 25:314/334 of query aligns to 3:290/304 of 4x8rA
4nq8B Crystal structure of a trap periplasmic solute binding protein from bordetella bronchispeptica (bb3421), target efi-510039, with density modeled as pantoate (see paper)
33% identity, 91% coverage: 25:328/334 of query aligns to 1:301/301 of 4nq8B
4n8yA Crystal structure of a trap periplasmic solute binding protein from bradyrhizobium sp. Btai1 b (bbta_0128), target efi-510056 (bbta_0128), complex with alpha/beta-d-galacturonate (see paper)
32% identity, 85% coverage: 26:310/334 of query aligns to 1:283/300 of 4n8yA
4pf8A Crystal structure of a trap periplasmic solute binding protein from sulfitobacter sp. Nas-14.1 (target efi-510299) with bound beta-d- galacturonate (see paper)
31% identity, 83% coverage: 36:311/334 of query aligns to 10:283/300 of 4pf8A
Sites not aligning to the query:
4p3lA Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085, with bound glucuronate, spg p6122 (see paper)
28% identity, 83% coverage: 38:313/334 of query aligns to 13:290/303 of 4p3lA
Sites not aligning to the query:
4xfeA Crystal structure of a trap periplasmic solute binding protein from pseudomonas putida f1 (pput_1203), target efi-500184, with bound d- glucuronate
32% identity, 78% coverage: 28:288/334 of query aligns to 3:264/306 of 4xfeA
Q16BC9 Solute-binding protein RD1_1052 from Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) (see paper)
34% identity, 80% coverage: 4:270/334 of query aligns to 7:272/325 of Q16BC9
4pcdA Crystal structure of a trap periplasmic solute binding protein from roseobacter denitrificans och 114 (rd1_1052, target efi-510238) with bound l-galactonate (see paper)
33% identity, 74% coverage: 24:270/334 of query aligns to 3:248/300 of 4pcdA
4pc9A Crystal structure of a trap periplasmic solute binding protein from rosenbacter denitrificans och 114 (rd1_1052, target efi-510238) with bound d-mannonate (see paper)
33% identity, 74% coverage: 24:270/334 of query aligns to 3:248/300 of 4pc9A
>Ac3H11_1227 TRAP-type C4-dicarboxylate transport system, periplasmic component
MKLLKTLLATALVAASLLPAAHAQERTIKFAFQNQKDHPQAQGAQKFADLVAAKTGGRIA
VKLFPGGTLGGDLQTVSALQGGTVEMTVLNAGILAAQSKEFGIYDFPFLFATPQEADAVT
DGPFGKKLLDKLQAKNLVGLGYWELGFRNLTNSKKPITKAEDIAGLKIRVIQSPIYIDLF
NALGANAVPMPFPELYTAMEQKAVDGQENPFSTILSSKFAEVQKYLTVTRHMYNPQAVIV
SKKFWDSLNPADQKALTDAMAEATTFQRGVSRVQANVALEDLKKAGMQVSEFSPAELDKL
RAKVKPVVEKHSEKVGAETVQEVYSTLAKLRGGK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory