Comparing Ac3H11_1603 FitnessBrowser__acidovorax_3H11:Ac3H11_1603 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2ia4B Crystal structure of novel amino acid binding protein from shigella flexneri
42% identity, 88% coverage: 34:300/305 of query aligns to 8:277/278 of 2ia4B
2vhaA Debp (see paper)
42% identity, 88% coverage: 34:300/305 of query aligns to 7:276/276 of 2vhaA
8ovoA X-ray structure of the sf-iglusnfr-s72a in complex with l-aspartate
40% identity, 79% coverage: 34:273/305 of query aligns to 5:247/503 of 8ovoA
5eyfB Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
27% identity, 80% coverage: 32:276/305 of query aligns to 3:241/243 of 5eyfB
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
28% identity, 73% coverage: 46:269/305 of query aligns to 8:223/225 of 4zv2A
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
28% identity, 73% coverage: 46:269/305 of query aligns to 8:225/226 of 4zv1A
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
29% identity, 77% coverage: 34:269/305 of query aligns to 2:228/229 of 5t0wA
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
28% identity, 77% coverage: 35:269/305 of query aligns to 3:227/229 of 6svfA
1xt8B Crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution (see paper)
29% identity, 77% coverage: 31:265/305 of query aligns to 3:230/251 of 1xt8B
2v25A Structure of the campylobacter jejuni antigen peb1a, an aspartate and glutamate receptor with bound aspartate (see paper)
24% identity, 77% coverage: 35:268/305 of query aligns to 3:229/231 of 2v25A
8eyzA Engineered glutamine binding protein bound to gln and a cobaloxime ligand (see paper)
26% identity, 75% coverage: 40:269/305 of query aligns to 1:221/226 of 8eyzA
4i62A 1.05 angstrom crystal structure of an amino acid abc transporter substrate-binding protein abpa from streptococcus pneumoniae canada mdr_19a bound to l-arginine
27% identity, 77% coverage: 35:269/305 of query aligns to 1:231/237 of 4i62A
4ymxA Crystal structure of the substrate binding protein of an amino acid abc transporter (see paper)
25% identity, 75% coverage: 42:269/305 of query aligns to 1:222/224 of 4ymxA
6h20A Glnh bound to asn, mycobacterium tuberculosis (see paper)
22% identity, 78% coverage: 38:275/305 of query aligns to 47:281/287 of 6h20A
6h1uA Glnh bound to asp, mycobacterium tuberculosis (see paper)
22% identity, 78% coverage: 38:275/305 of query aligns to 47:281/287 of 6h1uA
6h2tA Glnh bound to glu, mycobacterium tuberculosis (see paper)
22% identity, 78% coverage: 38:275/305 of query aligns to 48:282/288 of 6h2tA
2pyyB Crystal structure of the glur0 ligand-binding core from nostoc punctiforme in complex with (l)-glutamate (see paper)
25% identity, 69% coverage: 67:277/305 of query aligns to 19:214/217 of 2pyyB
Sites not aligning to the query:
6detA The crystal structure of tv2483 bound to l-arginine (see paper)
26% identity, 79% coverage: 30:269/305 of query aligns to 1:232/243 of 6detA
2q2cA Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus (see paper)
26% identity, 74% coverage: 43:269/305 of query aligns to 2:220/231 of 2q2cA
2q2aA Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus (see paper)
26% identity, 74% coverage: 43:269/305 of query aligns to 12:230/241 of 2q2aA
>Ac3H11_1603 FitnessBrowser__acidovorax_3H11:Ac3H11_1603
MAISRKTFTALAAGLTLACLTTAPALAQTVTQPTLEKIKASGKAVLGVRETSPPMAYALG
ANEKYVGYHVELCERVLKEIAPDAKLEYMAVTAQNTLPLVQNGTLDIGCGPTTNNTARQQ
QVAFAVTTYVSEVRMAVRKDSDLKSINQLAGRTIAASTGTTAVQLLRKQERVLGGAPIKT
VLGKDHHESFLLLESGRADAFVLDDNLLAGMIANSKDPSAYRIVGEPLGAEPIALLFRKD
DPTFKAAVDGVLTKLMQSGEMEKIYTKWFVNPIPPKNMSLNLPLGTTLRQLFATPNDKPL
ETYQQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory