Comparing Ac3H11_1612 FitnessBrowser__acidovorax_3H11:Ac3H11_1612 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
28% identity, 62% coverage: 56:218/264 of query aligns to 71:232/281 of P94530
>Ac3H11_1612 FitnessBrowser__acidovorax_3H11:Ac3H11_1612
MQKNGPIALAFNALVITFMLAPLLVVCIVAFTPHNTLTLPTTEFSLRWFKAVFEHSDFVQ
SFWNSLWLALASATLATALAVPAGIAITRYDFPGRGFLNGLFLSPLIIPHLVLGVALLRL
FALIGGTGSFGWLVVAHALIVTPYTLRLVVAALVGFDRSAEHAALSLGASQATVFTRITL
PMILPGVTGGWMLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPLMAAVSALMV
AVTAFAMVLLDRVYGLDRVLVGRK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory