SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ac3H11_1612 FitnessBrowser__acidovorax_3H11:Ac3H11_1612 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
28% identity, 62% coverage: 56:218/264 of query aligns to 71:232/281 of P94530

query
sites
P94530
S
 
S
D
 
I
F
 
Y
V
 
F
Q
 
K
S
 
W
F
 
F
W
 
F
N
 
N
S
 
S
L
 
L
W
 
V
L
 
L
A
 
G
L
 
L
A
 
F
S
 
T
A
 
T
T
 
V
L
 
L
A
 
T
T
 
L
A
 
F
L
 
F
A
 
S
V
 
S
P
 
M
A
 
I
G
 
G
I
 
Y
A
 
G
I
 
L
T
 
A
R
 
V
Y
 
Y
D
 
D
F
 
F
P
 
K
G
 
G
R
 
R
G
 
-
F
 
-
L
 
-
N
 
N
G
 
I
L
 
I
F
 
F
L
 
V
S
 
L
P
 
V
L
 
L
I
 
I
I
 
I
P
 
M
H
 
M
L
 
V
V
 
P
L
 
L
G
 
E
V
 
V
A
 
M
L
 
M
L
 
L
R
 
P
L
 
L
F
 
F
A
 
K
L
 
L
I
 
T
G
 
V
G
 
G
T
 
L
G
 
H
S
 
L
F
 
I
-
 
D
G
 
S
W
 
Y
L
 
T
V
 
G
V
 
V
A
 
I
H
 
L
A
 
P
L
 
F
I
 
I
V
 
V
T
 
S
P
 
P
Y
 
V
T
 
A
L
 
V
R
 
F
L
 
F
V
 
F
V
 
R
A
 
Q
A
 
Y
L
 
A
V
 
L
G
 
G
F
 
L
D
 
P
R
 
R
S
 
D
A
 
L
E
 
L
H
 
D
A
 
S
A
 
A
L
 
R
S
 
M
L
x
D
G
 
G
A
 
C
S
 
T
Q
 
E
A
 
F
T
 
G
V
 
I
F
 
F
T
 
F
R
 
R
I
 
I
T
 
M
L
 
A
P
 
P
M
 
L
I
 
M
L
 
K
P
 
P
G
 
A
V
 
F
T
 
G
G
 
A
G
 
M
W
 
I
M
 
I
L
 
L
A
 
Q
F
 
S
I
 
L
N
 
N
S
 
S
F
 
W
D
 
N
E
 
N
V
 
F
T
 
L
M
 
W
S
 
P
I
 
L
F
 
I
V
 
V
-
 
L
T
 
R
S
 
S
P
 
K
S
 
E
T
 
M
V
 
F
T
 
T
L
 
L
P
 
P
V
 
I

Query Sequence

>Ac3H11_1612 FitnessBrowser__acidovorax_3H11:Ac3H11_1612
MQKNGPIALAFNALVITFMLAPLLVVCIVAFTPHNTLTLPTTEFSLRWFKAVFEHSDFVQ
SFWNSLWLALASATLATALAVPAGIAITRYDFPGRGFLNGLFLSPLIIPHLVLGVALLRL
FALIGGTGSFGWLVVAHALIVTPYTLRLVVAALVGFDRSAEHAALSLGASQATVFTRITL
PMILPGVTGGWMLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPLMAAVSALMV
AVTAFAMVLLDRVYGLDRVLVGRK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory