Comparing Ac3H11_1937 FitnessBrowser__acidovorax_3H11:Ac3H11_1937 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 91% coverage: 6:259/279 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 91% coverage: 6:259/279 of query aligns to 4:253/253 of 1g9xB
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
33% identity, 91% coverage: 7:259/279 of query aligns to 3:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
33% identity, 91% coverage: 7:259/279 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
33% identity, 91% coverage: 7:259/279 of query aligns to 3:235/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
33% identity, 91% coverage: 7:259/279 of query aligns to 4:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
33% identity, 90% coverage: 7:258/279 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
33% identity, 90% coverage: 7:258/279 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
33% identity, 90% coverage: 7:257/279 of query aligns to 3:233/233 of 6b8bA
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
28% identity, 96% coverage: 10:276/279 of query aligns to 7:259/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
28% identity, 96% coverage: 10:276/279 of query aligns to 7:259/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
28% identity, 96% coverage: 10:276/279 of query aligns to 7:259/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
28% identity, 96% coverage: 10:276/279 of query aligns to 7:259/353 of Q97UY8
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
29% identity, 93% coverage: 15:274/279 of query aligns to 35:277/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
29% identity, 93% coverage: 15:274/279 of query aligns to 35:277/382 of 7aheC
Sites not aligning to the query:
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
29% identity, 91% coverage: 5:259/279 of query aligns to 1:235/240 of 6mjpA
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
31% identity, 90% coverage: 11:260/279 of query aligns to 11:245/375 of 2d62A
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
31% identity, 93% coverage: 1:260/279 of query aligns to 1:239/240 of 1ji0A
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
29% identity, 88% coverage: 4:248/279 of query aligns to 2:224/285 of 4yerA
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
29% identity, 88% coverage: 10:254/279 of query aligns to 10:223/353 of 1vciA
>Ac3H11_1937 FitnessBrowser__acidovorax_3H11:Ac3H11_1937
MTNDTLLSAQNLSVRFGGVLAVNNVSFDVRRGEVFTLIGPNGAGKTTVFNLISRIYTPTT
GTIAYAGPGGAMLPLTDQPPHKVASLGIARTFQNIELFEHASVLHNLLIGRHTQQHSSLW
AEMFFTRKVREGEIQAREKAEQIIDFLDLQHYRDTMVAGLPYGVRKVVELARALCTEPKL
LLLDEPSSGLNVEETDDMAFWIQDIQHELGITVLMVEHDMSLVSKVSDRVLAMNQGEVVA
MGTPREVQTHPGVVEAYLGTIDDVSNLRRPAGSTMGVRT
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory