Comparing Ac3H11_2064 FitnessBrowser__acidovorax_3H11:Ac3H11_2064 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
29% identity, 93% coverage: 14:286/293 of query aligns to 13:278/285 of 7cagA
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
28% identity, 68% coverage: 82:279/293 of query aligns to 280:488/490 of 4ki0F
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
28% identity, 68% coverage: 82:279/293 of query aligns to 295:503/514 of P02916
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
23% identity, 87% coverage: 11:265/293 of query aligns to 32:286/313 of P94529
>Ac3H11_2064 FitnessBrowser__acidovorax_3H11:Ac3H11_2064
MSKNTFETWLPKLVVAPAFVLGFAFIYGLMVWNGVLSLTVSRMLPNYEWAGLAQYERLWE
MDRWWVALKNLGIFGVGYVGGSLLIGVVLAVLLDQKIRAEGALRTIYLYPMALSFVVTGT
AWKWLLNPGLGIEKMVRDWGFPNFEFGWLVDTEMAIYCVVIAGIWQSAGFAMALFLAGLR
GIDDSIIKAAQVDGASLPRIYWRIVLPALRPVFFSTLMVLSHLAIKSFDLVMALTAGGPG
FATDVPATFMYTMSFSRGQIGLGAASATMMLATVAALVIPYLYSELRTKAHDR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory