SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ac3H11_2284 FitnessBrowser__acidovorax_3H11:Ac3H11_2284 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3abiA Crystal structure of l-lysine dehydrogenase from hyperthermophilic archaeon pyrococcus horikoshii (see paper)
28% identity, 65% coverage: 10:250/369 of query aligns to 3:238/349 of 3abiA

query
sites
3abiA
T
 
K
V
 
V
T
 
L
I
 
I
L
 
L
G
 
G
A
 
A
G
 
G
H
 
N
I
|
I
G
 
G
F
 
R
A
 
A
M
 
I
A
 
A
L
 
W
L
 
D
L
 
L
Q
 
K
Q
 
D
A
 
-
G
 
-
D
 
E
Y
 
F
D
 
D
I
 
V
L
 
Y
M
 
I
A
 
G
D
|
D
R
x
V
D
 
N
P
 
N
A
 
E
R
 
N
L
 
L
A
 
E
E
 
K
V
 
V
A
 
K
A
 
E
L
 
F
G
 
A
V
 
T
A
 
P
T
 
L
R
 
K
L
x
V
V
x
D
G
 
A
D
 
S
D
 
N
T
 
F
S
 
D
L
 
K
Q
 
L
S
 
V
A
 
E
I
 
V
A
 
M
G
 
K
R
 
E
F
 
F
A
 
E
-
 
L
V
 
V
L
 
I
N
 
G
A
|
A
L
|
L
P
|
P
F
 
G
H
 
F
R
x
L
A
 
G
V
 
F
P
 
K
V
 
S
A
 
I
T
 
K
L
 
A
C
 
A
A
 
I
A
 
K
A
 
S
G
 
K
V
 
V
H
 
D
Y
 
M
F
 
V
D
 
D
L
x
V
T
x
S
E
x
F
D
 
M
V
 
P
A
 
E
S
 
N
T
 
P
Q
 
L
A
 
E
I
 
L
R
 
R
A
 
D
L
 
E
A
 
A
A
 
E
K
 
K
A
 
A
R
 
Q
S
 
V
V
 
T
L
 
I
M
 
V
P
 
F
Q
 
D
C
 
A
G
 
G
L
x
F
A
|
A
P
|
P
G
 
G
F
 
L
I
 
S
G
 
N
I
 
I
V
 
L
G
 
M
N
 
G
D
 
R
L
 
I
A
 
F
R
 
Q
R
 
E
F
 
L
D
 
D
T
 
-
L
 
L
H
 
K
T
 
E
L
 
G
R
 
Y
M
 
I
R
 
Y
V
 
V
G
|
G
A
x
G
L
 
L
P
 
P
R
 
K
Y
 
D
P
 
P
Q
 
K
G
 
P
A
 
P
L
 
L
R
 
Y
Y
 
Y
N
 
K
L
 
I
T
 
T
W
|
W
S
|
S
T
 
P
E
 
R
G
x
D
L
 
L
I
 
I
N
 
E
E
|
E
Y
 
Y
C
 
T
N
 
R
P
 
P
C
 
A
E
 
R
A
 
V
I
 
I
V
 
R
D
 
N
G
 
G
V
 
K
R
 
V
T
 
S
T
 
K
V
 
V
P
 
D
A
 
P
L
 
L
E
 
S
G
 
E
L
 
V
E
 
K
T
 
K
F
 
V
A
 
K
L
 
I
D
 
G
G
 
K
V
 
F
E
 
E
Y
 
F
E
 
E
A
 
A
F
 
F
N
 
-
T
 
I
S
 
S
G
 
D
G
 
G
L
 
L
G
 
R
T
 
S
L
 
M
T
 
L
E
 
E
T
 
T
L
 
I
A
 
-
G
 
-
K
 
N
A
 
S
R
 
E
Q
 
R
V
 
L
D
 
E
Y
 
E
Q
 
W
S
x
T
I
 
L
R
|
R
Y
 
W
P
 
P
G
 
G
H
 
H
N
 
L
A
 
E
I
 
K
L
 
I
K
 
K
L
 
V
L
 
L

Sites not aligning to the query:

Query Sequence

>Ac3H11_2284 FitnessBrowser__acidovorax_3H11:Ac3H11_2284
MTSTTSTRHTVTILGAGHIGFAMALLLQQAGDYDILMADRDPARLAEVAALGVATRLVGD
DTSLQSAIAGRFAVLNALPFHRAVPVATLCAAAGVHYFDLTEDVASTQAIRALAAKARSV
LMPQCGLAPGFIGIVGNDLARRFDTLHTLRMRVGALPRYPQGALRYNLTWSTEGLINEYC
NPCEAIVDGVRTTVPALEGLETFALDGVEYEAFNTSGGLGTLTETLAGKARQVDYQSIRY
PGHNAILKLLLNDLRLRDRRDLLKDILESAIPTTDQDVIVIFATAAGLRGGRLVQESYSA
RIVGTELAGHRLSAIQLTTAAGICTALDLVAQGRLPQRGFVGQEAVRLGDFLANRFGVAY
AGEGALALA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory