Comparing Ac3H11_2295 FitnessBrowser__acidovorax_3H11:Ac3H11_2295 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3jtxB Crystal structure of aminotransferase (np_283882.1) from neisseria meningitidis z2491 at 1.91 a resolution
56% identity, 99% coverage: 1:395/401 of query aligns to 1:391/393 of 3jtxB
2x5dD Crystal structure of a probable aminotransferase from pseudomonas aeruginosa (see paper)
28% identity, 91% coverage: 32:394/401 of query aligns to 20:372/380 of 2x5dD
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
27% identity, 92% coverage: 32:399/401 of query aligns to 28:385/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
27% identity, 92% coverage: 32:399/401 of query aligns to 28:385/388 of 1gd9A
6l1nA Substrate bound bacf structure from bacillus subtillis (see paper)
28% identity, 95% coverage: 13:392/401 of query aligns to 21:383/393 of 6l1nA
Sites not aligning to the query:
6l1oB Product bound bacf structure from bacillus subtillis (see paper)
29% identity, 90% coverage: 32:392/401 of query aligns to 35:384/392 of 6l1oB
Sites not aligning to the query:
6l1lB Apo-bacf structure from bacillus subtillis (see paper)
29% identity, 90% coverage: 32:392/401 of query aligns to 35:384/393 of 6l1lB
1j32A Aspartate aminotransferase from phormidium lapideum
28% identity, 81% coverage: 33:358/401 of query aligns to 34:354/388 of 1j32A
P14909 Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 3 papers)
25% identity, 95% coverage: 17:395/401 of query aligns to 23:394/402 of P14909
Sites not aligning to the query:
2o1bA Structure of aminotransferase from staphylococcus aureus
25% identity, 91% coverage: 32:395/401 of query aligns to 22:371/376 of 2o1bA
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
27% identity, 92% coverage: 32:398/401 of query aligns to 40:384/384 of 1o4sB
8wkjA The crystal structure of aspartate aminotransferases lpg0070 from legionella pneumophila (see paper)
27% identity, 83% coverage: 32:364/401 of query aligns to 34:366/391 of 8wkjA
5wmiA Arabidopsis thaliana prephenate aminotransferase mutant- t84v (see paper)
26% identity, 89% coverage: 1:357/401 of query aligns to 3:365/402 of 5wmiA
Sites not aligning to the query:
5wmhA Arabidopsis thaliana prephenate aminotransferase (see paper)
27% identity, 81% coverage: 32:357/401 of query aligns to 32:365/399 of 5wmhA
5wmlA Arabidopsis thaliana prephenate aminotransferase mutant- k306a (see paper)
26% identity, 81% coverage: 32:357/401 of query aligns to 33:366/404 of 5wmlA
Sites not aligning to the query:
P58350 Aspartate aminotransferase; AAT; AspAT; Putative 2-aminoadipate transaminase; Transaminase A; EC 2.6.1.1; EC 2.6.1.39 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
25% identity, 82% coverage: 32:358/401 of query aligns to 44:376/410 of P58350
6f35A Crystal structure of the aspartate aminotranferase from rhizobium meliloti (see paper)
25% identity, 82% coverage: 32:358/401 of query aligns to 34:366/400 of 6f35A
2o0rA The three-dimensional structure of n-succinyldiaminopimelate aminotransferase from mycobacterium tuberculosis (see paper)
28% identity, 97% coverage: 5:392/401 of query aligns to 3:380/385 of 2o0rA
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
28% identity, 82% coverage: 32:361/401 of query aligns to 34:355/382 of 1b5oA
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
28% identity, 82% coverage: 32:361/401 of query aligns to 34:355/385 of Q56232
Sites not aligning to the query:
>Ac3H11_2295 FitnessBrowser__acidovorax_3H11:Ac3H11_2295
MNPLLSHLQPYPFERLRQLFAGVTPPAAYSPISLGMGEPRHPTPQFIKDALSNNLEGLAS
YPATAGEPRLREAFTRWLNQRYALTLDPGTQVLPVNGSREALFAFAQTIIDPSKGQPLVV
CPNPFYQIYEGAALLAGAQPYYAPSDPARNFAVNWDTVPESVWERTQLLFVCSPGNPTGA
VMPLCEWQKLFALSDRYGFVIASDECYSEIYFRDEPPLGGLQAAEKLGRRDFKNLISFTS
LSKRSNVPGLRSGFVAGDAALIKSFLLYRTYHGSAMSPIVQAASIAAWGDEQHVVENRTR
YRKKFAQVTPLLAGVMEVALPDAGFYLWAKVPDALGMTDAEFARALLAQYNVTVLPGSYL
AREAQGSNPGAQRVRMALVAETEECVEAALRIVQFIQSRTA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory