Comparing Ac3H11_2575 FitnessBrowser__acidovorax_3H11:Ac3H11_2575 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
3ggoA Crystal structure of prephenate dehydrogenase from a. Aeolicus with hpp and nadh (see paper)
35% identity, 94% coverage: 7:280/290 of query aligns to 10:279/285 of 3ggoA
3gggD The crystal structure of a. Aeolicus prephenate dehydrogenase in complex with tyrosine and NAD+ (see paper)
35% identity, 94% coverage: 7:280/290 of query aligns to 18:287/293 of 3gggD
3ggpA Crystal structure of prephenate dehydrogenase from a. Aeolicus in complex with hydroxyphenyl propionate and NAD+ (see paper)
35% identity, 94% coverage: 7:280/290 of query aligns to 10:279/286 of 3ggpA
4wjiA Crystal structure of cyclohexadienyl dehydrogenase from sinorhizobium meliloti in complex with NADP and tyrosine
38% identity, 94% coverage: 2:274/290 of query aligns to 4:277/293 of 4wjiA
5uyyA Crystal structure of prephenate dehydrogenase tyra from bacillus anthracis in complex with l-tyrosine (see paper)
33% identity, 97% coverage: 1:280/290 of query aligns to 8:287/373 of 5uyyA
Sites not aligning to the query:
6u60B Crystal structure of prephenate dehydrogenase tyra from bacillus anthracis in complex with NAD and l-tyrosine (see paper)
33% identity, 94% coverage: 7:280/290 of query aligns to 6:279/365 of 6u60B
Sites not aligning to the query:
3b1fA Crystal structure of prephenate dehydrogenase from streptococcus mutans (see paper)
29% identity, 94% coverage: 9:280/290 of query aligns to 13:282/286 of 3b1fA
2f1kA Crystal structure of synechocystis arogenate dehydrogenase (see paper)
29% identity, 88% coverage: 4:257/290 of query aligns to 2:251/279 of 2f1kA
2pv7B Crystal structure of chorismate mutase / prephenate dehydrogenase (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution (see paper)
23% identity, 91% coverage: 9:271/290 of query aligns to 17:253/280 of 2pv7B
Sites not aligning to the query:
>Ac3H11_2575 FitnessBrowser__acidovorax_3H11:Ac3H11_2575
MFEQLGLIGCGLMGGSFALAMKKAGLVKRVVGYSKSPSTTDRARQLGVIDVEAPSALLAV
AGADIVLVAVPVAATEATLKAIKHLVTPQMLIMDVGSTKADVVHAAQRSLRDQVGSFVPA
HPITGREVSGVEHAEADLYSGRQVILTPTERTLTVHLQNAEKIWNALGCRVTSMSPESHD
AAFAAVSHLPHVLAFAMMNSITGQAHGDDFLSLAGPGFRDFTRIAASDPKVWRDIMLANR
EELLAQSKLFQQALHNIEQAMEKGNAQALEDMLTLASETRAHWRMGAKRK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory