SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ac3H11_2594 FitnessBrowser__acidovorax_3H11:Ac3H11_2594 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

Q5ZC82 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; Protein LONELY GUY; EC 3.2.2.n1 from Oryza sativa subsp. japonica (Rice) (see paper)
33% identity, 41% coverage: 145:261/287 of query aligns to 74:190/242 of Q5ZC82

query
sites
Q5ZC82
G
 
G
G
 
G
G
 
S
P
 
I
G
 
G
I
 
L
M
 
M
E
 
G
A
 
L
A
 
V
N
 
S
R
 
H
G
 
A
A
 
V
H
 
H
D
 
D
E
 
G
G
 
G
A
 
R
L
 
H
N
 
V
V
 
I
G
 
G
L
 
V
-
 
I
-
 
P
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K
I
 
S
A
 
L
L
 
M
P
 
P
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R
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E
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V
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T
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G
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E
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P
Y
 
V
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G
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E
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V
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R
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A
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V
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S
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G
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M
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H
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E
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-
A
 
-
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-
R
 
R
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K
M
 
A
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E
F
 
M
M
 
A
M
 
R
R
 
F
A
 
A
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D
A
 
A
L
 
F
V
 
I
A
 
A
F
 
L
P
 
P
G
 
G
G
 
G
F
 
Y
G
 
G
T
 
T
L
 
L
D
 
E
E
 
E
L
 
L
F
 
L
E
 
E
V
 
V
L
 
I
T
 
T
L
 
W
V
 
A
Q
 
Q
T
 
L
G
 
G
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I
A
 
H
K
 
K
P
 
K
V
 
-
P
 
P
I
 
V
V
 
G
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L
C
 
L
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N
T
 
V
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D
-
 
G
Y
 
F
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Y
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F
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A

Sites not aligning to the query:

P48636 Cytokinin riboside 5'-monophosphate phosphoribohydrolase; AMP nucleosidase; PaLOG; EC 3.2.2.n1; EC 3.2.2.4 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
36% identity, 31% coverage: 196:284/287 of query aligns to 92:181/195 of P48636

query
sites
P48636
R
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R
K
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K
M
 
A
H
 
R
F
 
M
M
 
A
M
 
E
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L
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A
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D
A
 
A
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F
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I
A
 
A
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L
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P
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G
G
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G
F
x
L
G
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G
T
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T
L
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L
D
x
E
E
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E
L
 
L
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F
E
|
E
V
 
V
L
 
W
T
 
T
L
 
W
V
 
G
Q
 
Q
T
 
L
G
 
G
-
 
Y
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H
A
 
A
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K
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P
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L
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E
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V
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N
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G
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F
Y
 
Y
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D
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L
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L
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T
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F
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L
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D
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H
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L
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D
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E
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A
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H
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G
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A
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P
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E
E
 
A
A
 
L
W
 
L
D
 
D
L
 
A
I
 
L
R
 
A
A
 
A
F
 
W

Sites not aligning to the query:

5zbkA Crystal structure of type-i log from pseudomonas aeruginosa pao1 in complex with amp (see paper)
34% identity, 31% coverage: 196:284/287 of query aligns to 91:180/182 of 5zbkA

query
sites
5zbkA
R
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R
K
|
K
M
 
A
H
 
R
F
 
M
M
 
A
M
 
E
R
 
L
A
 
A
K
 
D
A
 
A
L
 
F
V
 
I
A
 
A
F
 
L
P
 
P
G
 
G
G
|
G
F
 
L
G
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G
T
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T
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L
D
 
E
E
 
A
L
 
L
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F
E
 
E
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V
L
 
W
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T
L
 
W
V
 
G
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Q
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L
G
 
G
-
 
Y
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H
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A
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K
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P
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L
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G
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L
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L
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N
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G
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F
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Y
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D
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L
L
 
L
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F
F
 
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D
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H
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L
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D
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E
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A
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H
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G
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M
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L
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Q
Y
 
R
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A
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P
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E
E
 
A
A
 
L
W
 
L
D
 
D
L
 
A
I
 
L
R
 
A
A
 
A
F
 
W

Sites not aligning to the query:

Query Sequence

>Ac3H11_2594 FitnessBrowser__acidovorax_3H11:Ac3H11_2594
MEANTQLNERRLADAWAELHNHATNGNPLQADAYRMAFADPEFLFRRETRGIRFQLEMLK
PDLGQTEQGIENTIVVFGSARFMAPEDAAQALTAAEATGDATQIARARLAVRNARHYDLA
REFSRLVAQYSNGKPESERLYICTGGGPGIMEAANRGAHDEGALNVGLNIALPHEQSGNR
YITPSLSFKFHYFALRKMHFMMRAKALVAFPGGFGTLDELFEVLTLVQTGKAKPVPIVLC
GTDYWKRLINFDVLVEEGTISAQDLKLFHYTDDPQEAWDLIRAFYKL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory