SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ac3H11_2834 FitnessBrowser__acidovorax_3H11:Ac3H11_2834 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
45% identity, 95% coverage: 8:168/170 of query aligns to 1:157/158 of 2yjvC

query
sites
2yjvC
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V
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L

1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
47% identity, 77% coverage: 33:163/170 of query aligns to 25:155/156 of 1nxjA

query
sites
1nxjA
F
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V

Sites not aligning to the query:

Query Sequence

>Ac3H11_2834 FitnessBrowser__acidovorax_3H11:Ac3H11_2834
MSAASNPPFSTCDFCDVHKADVSGAFRVLPPVFQSYGGKRVFAGPVTTVKCHEDNSLVKA
AVESPGEGRVLVVDGGGSLRRALVGGNLAAAAAHNGWAGVVVDGCVRDVAELNAAAVGIR
ALALIPLPTERRGEGQRDVAVLMQGVWVRPGDWLYADADGIVVSAQALTA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory