Comparing Ac3H11_2943 FitnessBrowser__acidovorax_3H11:Ac3H11_2943 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
28% identity, 89% coverage: 31:311/316 of query aligns to 5:280/285 of 7cagA
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
22% identity, 90% coverage: 8:290/316 of query aligns to 3:286/313 of P94529
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
25% identity, 76% coverage: 69:307/316 of query aligns to 236:482/490 of 4ki0F
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
25% identity, 76% coverage: 69:307/316 of query aligns to 251:497/514 of P02916
>Ac3H11_2943 FitnessBrowser__acidovorax_3H11:Ac3H11_2943
VELRTSPPIAHATACPFSAAFFRCFDGLSMNRRLLPRLLLTPAMATLFLWMIVPLVMTIY
FSLIRYNLMQPDQTGFAGLENFEFFVTDPSFGTAVVNTILLLGSVILITVVLGVAIALLI
NEPFPGRGIVRVLLISPFFVMPTVNALMWKNMMMNPIYGVLAQVWIFFGAAPVDWLTDHP
LFSVIVMVSWQWLPFATLIFMTALQSMNHEQLEASRMDGANYLQQLRYLYVPHLGRSVAV
VVMIELIFLLSIFAEIYTTTAGGPGDASTNVTFLIFKQALLNFDAGVASAGALFAVVLAN
IAAVFLIRMVGKNLDK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory