Comparing Ac3H11_3200 Amino acid ABC transporter permease protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3c4jA Abc protein artp in complex with atp-gamma-s
57% identity, 41% coverage: 356:604/604 of query aligns to 4:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
57% identity, 41% coverage: 356:604/604 of query aligns to 4:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
57% identity, 41% coverage: 356:604/604 of query aligns to 4:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
57% identity, 41% coverage: 356:604/604 of query aligns to 4:242/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
58% identity, 41% coverage: 358:604/604 of query aligns to 4:240/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
58% identity, 41% coverage: 356:604/604 of query aligns to 3:240/241 of 4u00A
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
52% identity, 40% coverage: 361:600/604 of query aligns to 12:253/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
52% identity, 40% coverage: 361:601/604 of query aligns to 8:250/258 of 1b0uA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
41% identity, 39% coverage: 368:604/604 of query aligns to 18:245/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
40% identity, 39% coverage: 368:604/604 of query aligns to 19:246/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
40% identity, 39% coverage: 368:604/604 of query aligns to 19:246/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
40% identity, 39% coverage: 368:604/604 of query aligns to 19:246/344 of 3tuiC
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 41% coverage: 356:603/604 of query aligns to 18:251/378 of P69874
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
38% identity, 39% coverage: 363:600/604 of query aligns to 34:263/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
38% identity, 39% coverage: 363:600/604 of query aligns to 34:263/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
39% identity, 38% coverage: 363:591/604 of query aligns to 34:254/260 of 7ahdC
Sites not aligning to the query:
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
38% identity, 41% coverage: 355:601/604 of query aligns to 6:244/375 of 2d62A
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
35% identity, 41% coverage: 355:600/604 of query aligns to 10:252/257 of P0AAH0
Sites not aligning to the query:
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 35% coverage: 368:581/604 of query aligns to 21:224/648 of P75831
1g291 Malk (see paper)
37% identity, 41% coverage: 356:601/604 of query aligns to 4:241/372 of 1g291
Sites not aligning to the query:
>Ac3H11_3200 Amino acid ABC transporter permease protein
VHPAAPATPVGSHAPSAPPATPSPAPAKGDYSHYRVVPARHRARAVGTVFATVVIALVLY
SVLTNPRWGWGVFGEYFFSEPVLVGLGRTLLLTALGALFGFTLGTALALARVSRSPLLAG
LSWTFIWIFRSIPVIVLLLIINNLGYLYETVSVGLPFTDWTFFSYPTTQLISPFVAALIG
LTLNQAAFASEIVRGGILSVDQGQLEAAAALGLPRRRQAFRIVLPQAMRSILPAGFNDII
GLAKGTSNVYILALPELFYTIQIIYRRNLEVIPLLMVATVWYLVILTVLSLLQYYIERHF
SKGALRSPPPSIFSAVAARLWPARRAVVAPGPVVPAAPAPVAVPRWTGALNRGGEVTIHG
VSKRYGALEVLKDVTLTVLPGSVTVILGPSGSGKSTLLRSINHLERVDGGFIAIDGELIG
YRQDADALYELGENDILKRRVDVGMVFQNFNLFPHLTVLENIVEAPVTVRKLARAEAEAL
ALELLARVGLSDKAHSYPRQLSGGQQQRVAIARALALKPKVLLFDEPTSALDPELVGEVL
DVIKELARTGTTLVIVTHEIGFAREVADTVVFMEQGRVVETGTPAKVFSQPDHPRTAAFL
AKVL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory