Comparing Ac3H11_3274 FitnessBrowser__acidovorax_3H11:Ac3H11_3274 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P13009 Methionine synthase; 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12-dependent; MS; EC 2.1.1.13 from Escherichia coli (strain K12) (see 5 papers)
62% identity, 100% coverage: 2:903/903 of query aligns to 341:1222/1227 of P13009
Sites not aligning to the query:
Q99707 Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Homo sapiens (Human) (see 6 papers)
53% identity, 100% coverage: 1:903/903 of query aligns to 355:1260/1265 of Q99707
Sites not aligning to the query:
3ivaA Structure of the b12-dependent methionine synthase (meth) c-teminal half with adohcy bound (see paper)
57% identity, 66% coverage: 311:903/903 of query aligns to 3:572/576 of 3ivaA
3bulA E. Coli i690c/g743c meth c-terminal fragment (649-1227) (see paper)
57% identity, 66% coverage: 311:903/903 of query aligns to 3:572/577 of 3bulA
3k13C Structure of the pterin-binding domain metr of 5- methyltetrahydrofolate-homocysteine methyltransferase from bacteroides thetaiotaomicron
70% identity, 31% coverage: 17:300/903 of query aligns to 4:286/287 of 3k13C
4cczA Crystal structure of human 5-methyltetrahydrofolate-homocysteine methyltransferase, the homocysteine and folate binding domains
61% identity, 33% coverage: 1:297/903 of query aligns to 315:611/611 of 4cczA
1mskA Methionine synthase (activation domain) (see paper)
55% identity, 36% coverage: 577:903/903 of query aligns to 1:322/327 of 1mskA
6bdyA Crystal structure of the meth reactivation domain bound to sinefungin (see paper)
55% identity, 36% coverage: 577:903/903 of query aligns to 1:322/326 of 6bdyA
1bmtA How a protein binds b12: a 3.O angstrom x-ray structure of the b12- binding domains of methionine synthase (see paper)
60% identity, 29% coverage: 311:571/903 of query aligns to 3:244/246 of 1bmtA
8g3hA Structure of cobalamin-dependent methionine synthase (meth) in a resting state (see paper)
34% identity, 60% coverage: 7:550/903 of query aligns to 322:834/841 of 8g3hA
8sseA Methionine synthase, c-terminal fragment, cobalamin and reactivation domains from thermus thermophilus hb8
32% identity, 61% coverage: 324:873/903 of query aligns to 4:506/507 of 8sseA
5vooA Methionine synthase folate-binding domain with methyltetrahydrofolate from thermus thermophilus hb8 (see paper)
36% identity, 28% coverage: 15:263/903 of query aligns to 1:243/282 of 5vooA
7xcnP Crystal structure of the mttb-mttc complex at 2.7 a resolution (see paper)
33% identity, 21% coverage: 332:517/903 of query aligns to 12:188/215 of 7xcnP
Sites not aligning to the query:
2i2xB Crystal structure of methanol:cobalamin methyltransferase complex mtabc from methanosarcina barkeri (see paper)
32% identity, 23% coverage: 310:517/903 of query aligns to 20:216/258 of 2i2xB
Sites not aligning to the query:
Q46EH4 Methanol--corrinoid protein; Methanol:corrinoid methyltransferase 1 subunit of 27 kDa; MT1 subunit 27 kDa from Methanosarcina barkeri (strain Fusaro / DSM 804) (see paper)
32% identity, 23% coverage: 310:517/903 of query aligns to 20:216/258 of Q46EH4
Sites not aligning to the query:
3bofA Cobalamin-dependent methionine synthase (1-566) from thermotoga maritima complexed with zn2+ and homocysteine (see paper)
27% identity, 27% coverage: 17:259/903 of query aligns to 315:538/560 of 3bofA
Sites not aligning to the query:
1q8jA Cobalamin-dependent methionine synthase (1-566) from thermotoga maritima (cd2+, hcy, methyltetrahydrofolate complex) (see paper)
27% identity, 27% coverage: 17:259/903 of query aligns to 315:538/559 of 1q8jA
4jgiB 1.5 angstrom crystal structure of a novel cobalamin-binding protein from desulfitobacterium hafniense dcb-2 (see paper)
32% identity, 16% coverage: 367:512/903 of query aligns to 45:174/206 of 4jgiB
Sites not aligning to the query:
3ezxA Structure of methanosarcina barkeri monomethylamine corrinoid protein
35% identity, 16% coverage: 339:485/903 of query aligns to 18:156/212 of 3ezxA
Sites not aligning to the query:
2yckX Methyltransferase bound with tetrahydrofolate (see paper)
29% identity, 27% coverage: 16:258/903 of query aligns to 10:238/272 of 2yckX
>Ac3H11_3274 FitnessBrowser__acidovorax_3H11:Ac3H11_3274
MKLSGLEPVSIGEGTLFVNIGERTNVTGSKAFARMILNGQYEEALAVARQQVENGAQVID
INMDEAMLDSKAAMVRFLQLIASEPDIARVPIMVDSSKWDVIEAGLRCIQGKGIVNSISM
KEGVEKFKHEARLVRRYGAAAVVMAFDEVGQADTYARKIEICERAYRVLVDEVGFPPEDI
IFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPGAKVSGGVSNVSFSFRGNDPVREAI
HTVFLYHAIQAGMDMGIVNAGMVGVYDDLEPVLRERVEDVVLNRRADAGERLVEIAETAK
SGAKDESKKLEWRGTPEHPKTVGERLSHALVHGITDFIVEDTEEAYQAIVAKGGRPLHVI
EGPLMDGMNVVGDLFGAGKMFLPQVVKSARVMKSAVAHLIPYIEEEKRQDELAGRDVRSK
GKIIIATVKGDVHDIGKNIVTVVLQCNNFEVVNMGVMVPCHEILARAKVEGADIVGLSGL
ITPSLEEMQYVAGEMQKDDHFRIKKIPLLIGGATTSRVHTAVKIAPHYEGPVVYVPDASR
SVSVAQSLLGDGVQNYVQELNADYEKVRTQHANKKQTPMWSLEKARANRTPVNFSTYVPP
TPRLLGRRVFKNFDLAELAKYIDWGPFFQTWDLAGPYPAILTDEVVGVEATRVFADGQAM
LKKLIEGRWLSASGVMALYPANSVGDDIEFYTDETRTQVAMTWYGMRQQTEKQMIDGVMR
PSRCLADFVAPKDSGIADYAGLFAVTAGLGVEKKEQAFVDALDDYSAIMLKSLADRLAEA
FAECLHQRVRTDLWGYAAGEQLSNDEMIAEKYAGIRPAPGYPACPDHSAKQELFRVLQCE
EIGMGLTESLAMTPAASVSGFYIGHPDSVYFNVGKIGEDQLHDMAERRGMDEKVLERLLA
PNL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory