SitesBLAST

P19921 Carbon monoxide dehydrogenase small chain; CO dehydrogenase subunit S; CO-DH S; EC 1.2.5.3 from Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) (Oligotropha carboxidovorans) (see 2 papers)
57% identity, 94% coverage: 2:147/156 of query aligns to 5:150/166 of P19921

query
sites
P19921

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C42 (= C39) binding [2Fe-2S] cluster
C47 (= C44) binding [2Fe-2S] cluster
C50 (= C47) binding [2Fe-2S] cluster
C62 (= C59) binding [2Fe-2S] cluster
C102 (= C99) binding [2Fe-2S] cluster
C105 (= C102) binding [2Fe-2S] cluster
C137 (= C134) binding [2Fe-2S] cluster
C139 (= C136) binding [2Fe-2S] cluster

1n5wA Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
57% identity, 94% coverage: 2:147/156 of query aligns to 3:148/161 of 1n5wA

query
sites
1n5wA

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binding flavin-adenine dinucleotide: S43 (= S42), H44 (≠ Q43)
binding fe2/s2 (inorganic) cluster: I38 (≠ V37), G39 (= G38), C40 (= C39), S43 (= S42), C45 (= C44), G46 (= G45), C48 (= C47), C60 (= C59), C100 (= C99), G101 (= G100), C103 (= C102), C135 (= C134), C137 (= C136)

1n5wD Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
57% identity, 94% coverage: 2:147/156 of query aligns to 3:148/158 of 1n5wD

query
sites
1n5wD

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binding flavin-adenine dinucleotide: S43 (= S42), H44 (≠ Q43)
binding fe2/s2 (inorganic) cluster: C40 (= C39), S43 (= S42), C45 (= C44), G46 (= G45), C48 (= C47), C60 (= C59), C100 (= C99), G101 (= G100), C103 (= C102), C135 (= C134), C137 (= C136)
binding pterin cytosine dinucleotide: Q99 (= Q98), C137 (= C136)

1ffvA Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava (see paper)
55% identity, 97% coverage: 3:153/156 of query aligns to 4:153/155 of 1ffvA

query
sites
1ffvA

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binding fe2/s2 (inorganic) cluster: I38 (≠ V37), C40 (= C39), S43 (= S42), C45 (= C44), G46 (= G45), C48 (= C47), C60 (= C59), C99 (= C99), G100 (= G100), C102 (= C102), C134 (= C134), C136 (= C136)
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q98 (= Q98), C136 (= C136)

1ffuD Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava which lacks the mo-pyranopterin moiety of the molybdenum cofactor (see paper)
55% identity, 97% coverage: 3:153/156 of query aligns to 5:154/156 of 1ffuD

query
sites
1ffuD

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binding fe2/s2 (inorganic) cluster: C41 (= C39), S44 (= S42), H45 (≠ Q43), C46 (= C44), G47 (= G45), C49 (= C47), C61 (= C59), C100 (= C99), G101 (= G100), C103 (= C102), C135 (= C134), C137 (= C136)

5y6qA Crystal structure of an aldehyde oxidase from methylobacillus sp. Ky4400 (see paper)
50% identity, 99% coverage: 1:155/156 of query aligns to 3:157/157 of 5y6qA

query
sites
5y6qA

M

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binding fe2/s2 (inorganic) cluster: G40 (= G38), C41 (= C39), D42 (= D40), G44 (≠ S42), C46 (= C44), G47 (= G45), C49 (= C47), C61 (= C59), C101 (= C99), G102 (= G100), C104 (= C102), C136 (= C134), C138 (= C136)
binding pterin cytosine dinucleotide: Q100 (= Q98), C138 (= C136)

1sb3C Structure of 4-hydroxybenzoyl-coa reductase from thauera aromatica (see paper)
48% identity, 96% coverage: 3:152/156 of query aligns to 5:153/161 of 1sb3C

query
sites
1sb3C

V

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A

binding fe2/s2 (inorganic) cluster: Q39 (≠ V37), C41 (= C39), G44 (≠ S42), C46 (= C44), G47 (= G45), C49 (= C47), C61 (= C59), C100 (= C99), G101 (= G100), C103 (= C102), C135 (= C134), C137 (= C136)
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q98), C137 (= C136)

P77165 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA; EC 1.2.99.6 from Escherichia coli (strain K12) (see paper)
46% identity, 94% coverage: 1:147/156 of query aligns to 61:221/229 of P77165

query
sites
P77165

M

M

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T

H

S

G

Q

Q

C
|
C

G
|
G

A

A

C
|
C

T

T

V

V

H

L

V

V

N

N

G

G

R

R

A

R

V

L

K

N

S

A

C
|
C

A

L

M

T

L

L

A

A

V

V

Q

M

A

H

Q

Q

G

G

A

A

E

E

V

I

T

T

I

I

E

E

G

G

M

L

A

G

A

S

A

P

D

D

G

N

T

-

M

L

H

H

P

P

M

M

Q

Q

A

A

F

F

K

I

E

K

C

H

H

D

G

G

L

F

Q

Q

C
|
C

G

G

F

Y

C
|
C

T

T

P

S

G

G

M

Q

V

I

M

C

S

S

A

S

V

V

D

A

L

V

C

L

K

K

-

E

-

I

-

Q

-

D

-

G

-

I

-

P

-

S

-

H

-

V

-

T

-

V

-

D

-

L

-

V

N

S

H

A

P

P

G

E

A

T

S

T

E

A

G

D

E

E

I

I

R

R

E

E

L

R

L

M

E

S

G

G

N

N

I

I

C
|
C

R

R

C
|
C

T

G

G

A

Y

Y

Q

A

N

N

I

I

V

L

R

A

A

A

V

I

Q

E

C99 (= C39) binding [2Fe-2S] cluster
C104 (= C44) binding [2Fe-2S] cluster
G105 (= G45) binding [2Fe-2S] cluster
C107 (= C47) binding [2Fe-2S] cluster
C119 (= C59) binding [2Fe-2S] cluster
C158 (= C99) binding [2Fe-2S] cluster
C161 (= C102) binding [2Fe-2S] cluster
C208 (= C134) binding [2Fe-2S] cluster
C210 (= C136) binding [2Fe-2S] cluster

5g5gA Escherichia coli periplasmic aldehyde oxidase (see paper)
46% identity, 94% coverage: 1:147/156 of query aligns to 10:170/175 of 5g5gA

query
sites
5g5gA

M

M

Q

P

V

L

Q

T

F

L

T

K

V

V

N

N

G

G

R

K

A

T

A

E

S

Q

V

L

D

E

V

V

P

D

P

T

N

R

T

T

L

T

L

L

V

L

H

D

A

T

L

L

R

R

E

E

H

N

L

L

L

H

L

L

T

I

G

G

T

T

H

K

V

K

G
|
G

C
|
C

D
|
D

T

H

S
x
G

Q

Q

C
|
C

G
|
G

A

A

C
|
C

T

T

V

V

H

L

V

V

N

N

G

G

R

R

A

R

V

L

K

N

S

A

C
|
C

A

L

M

T

L

L

A

A

V

V

Q

M

A

H

Q

Q

G

G

A

A

E

E

V

I

T

T

I

I

E

E

G

G

M

L

A

G

A

S

A

P

D

D

G

-

T

N

M

L

H

H

P

P

M

M

Q

Q

A

A

F

F

K

I

E

K

C

H

H

D

G

G

L

F

Q

Q

C
|
C

G
|
G

F

Y

C
|
C

T

T

P

S

G

G

M

Q

V

I

M

C

S

S

A

S

V

V

D

A

L

V

C

L

K

K

-

E

-

I

-

Q

-

D

-

G

-

I

-

P

-

S

-

H

-

V

-

T

-

V

-

D

-

L

-

V

N

S

H

A

P

P

G

E

A

T

S

T

E

A

G

D

E

E

I

I

R

R

E

E

L

R

L

M

E

S

G

G

N

N

I

I

C
|
C

R

R

C
|
C

T

G

G

A

Y

Y

Q

A

N

N

I

I

V

L

R

A

A

A

V

I

Q

E

binding fe2/s2 (inorganic) cluster: G47 (= G38), C48 (= C39), D49 (= D40), G51 (≠ S42), C53 (= C44), G54 (= G45), C56 (= C47), C68 (= C59), C107 (= C99), G108 (= G100), C110 (= C102), C157 (= C134), C159 (= C136)

1t3qA Crystal structure of quinoline 2-oxidoreductase from pseudomonas putida 86 (see paper)
42% identity, 94% coverage: 1:146/156 of query aligns to 4:148/162 of 1t3qA

query
sites
1t3qA

M

M

Q

R

V

I

Q

S

F

A

T

T

V

I

N

N

G

G

R

K

A

P

A

R

S

V

V

F

D

Y

V

V

P

E

P

P

N

R

T

M

L

H

L

L

V

A

H

D

A

A

L

L

R

R

E

E

H

V

L

V

L

G

L

L

T

T

G

G

T

T

H

K

V
x
I

G

G

C
|
C

D
x
E

T

Q

S
x
G

Q

V

C
|
C

G
|
G

A

S

C
|
C

T

T

V

I

H

L

V

I

N

D

G

G

R

A

A

P

V

M

K
x
R

S

S

C
|
C

A

L

M

T

L

L

A

A

V

V

Q

Q

A

A

Q

E

G

G

A

C

E

S

V

I

T

E

T

T

I

V

E

E

G

G

M

L

A

S

A

Q

A

G

D

E

G

-

T

K

M

L

H

N

P

A

M

L

Q

Q

A

D

A

S

F

F

K

R

E

R

C

H

H

H

G

A

L

L

Q
|
Q

C
|
C

G
|
G

F

F

C
|
C

T

T

P

A

G

G

M

M

V

L

M

A

S

T

A

A

V

R

D

S

L

I

C

L

K

A

N

E

H

N

P

P

G

A

A

P

S

S

E

R

G

D

E

E

I

V

R

R

E

E

L

V

L

M

E

S

G

G

N

N

I

L

C
|
C

R

R

C
|
C

T

T

G

G

Y

Y

Q

E

N

T

I

I

V

I

R

D

A

A

V

I

binding fe2/s2 (inorganic) cluster: I40 (≠ V37), C42 (= C39), E43 (≠ D40), G45 (≠ S42), C47 (= C44), G48 (= G45), C50 (= C47), R60 (≠ K57), C62 (= C59), C101 (= C99), G102 (= G100), C104 (= C102), C136 (= C134), C138 (= C136)
binding pterin cytosine dinucleotide: Q100 (= Q98), C138 (= C136)

7dqxC Crystal structure of xanthine dehydrogenase family protein
45% identity, 93% coverage: 1:145/156 of query aligns to 4:148/160 of 7dqxC

query
sites
7dqxC

M

F

Q

R

V

L

Q

T

F

V

T

E

V

V

N

N

G

G

R

V

A

T

A

H

S

A

V

T

D

D

V

V

P

E

P

P

N

R

T

R

L

L

V

A

H

D

A

F

L

L

R

R

E

D

H

D

L

L

L

H

L

L

T

R

G

G

T

T

H

R

V

V

G

G

C
|
C

D

E

T

H

S
x
G

Q
x
V

C
|
C

G

G

A

S

C
|
C

T

T

V

V

H

I

V

L

N

D

G

G

R

Q

A

P

V

V

K
x
R

S

S

C
|
C

A

T

M

V

L

L

A

A

V

V

Q

Q

A

A

Q

N

G

N

A

S

E

R

V

I

T

E

T

T

I

V

E

E

G

S

M

L

A

-

A

Q

A

K

D

D

G

G

T

Q

M

L

H

H

P

P

M

L

Q

Q

A

R

A

S

F

F

K

S

E

K

C

C

H

H

G

A

L

L

Q
|
Q

C
|
C

G

G

F

F

C
|
C

T

T

P

S

G

G

M

F

V

L

M

M

S

T

A

L

V

K

D

P

L

L

C

Y

K

D

N

D

H

E

P

D

G

V

A

T

S

L

E

D

G

A

-

T

E

S

I

A

R

R

E

E

L

A

L

I

E

S

G

G

N

N

I

L

C
|
C

R

R

C
|
C

T

T

G

G

Y

Y

Q

Q

N

Q

I

I

V

V

R

E

A

A

binding fe2/s2 (inorganic) cluster: C42 (= C39), G45 (≠ S42), V46 (≠ Q43), C47 (= C44), C50 (= C47), R60 (≠ K57), C62 (= C59), Q100 (= Q98), C101 (= C99), C104 (= C102), C137 (= C134), C139 (= C136)
binding pterin cytosine dinucleotide: Q100 (= Q98), C139 (= C136)

8gy3B Cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans
40% identity, 94% coverage: 1:147/156 of query aligns to 1:145/154 of 8gy3B

query
sites
8gy3B

M

M

Q

T

V

T

Q

K

F

F

T

E

V

L

N

N

G

G

R

Q

A

P

A

V

S

T

V

V

D

D

V

A

P

P

P

A

N

D

T

T

L

P

L

L

V

L

H

W

A

V

L

I

R

R

E

D

H

D

L

L

L

N

L

L

T

T

G

G

T

T

H

K

V

F

G
|
G

C
|
C

D
x
G

T

I

S
x
G

Q

E

C
|
C

G
|
G

A

A

C
|
C

T

T

V

V

H

H

V

V

N

G

G

G

R

R

A

A

V

T

K

R

S

S

C
|
C

A

I

M

T

L

P

A

L

V

S

Q

A

A

V

Q

E

G

G

A

A

E

S

V

I

T

T

I

I

E

E

G

G

M

L

A

D

A

P

A

A

D

G

G

N

T

-

M

-

H

H

P

V

M

V

Q

Q

A

V

A

A

F

W

K

R

E

D

C

Q

H

Q

G

V

L

P

Q
|
Q

C
|
C

G

G

F

Y

C
|
C

T
x
Q

P

S

G

G

M

Q

V

I

M

M

S

Q

A

A

V

A

D

S

L

L

C

L

K

K

N

D

H

Y

P

P

G

N

A

P

S

T

E

D

G

D

E

Q

I

I

R

D

E

G

L

V

L

M

E

G

G

G

N

S

I

L

C
|
C

R

R

C
|
C

T

M

G

T

Y

Y

Q

I

N

R

I

I

V

R

R

K

A

A

V

I

Q

K

binding fe2/s2 (inorganic) cluster: G38 (= G38), C39 (= C39), G40 (≠ D40), G42 (≠ S42), C44 (= C44), G45 (= G45), C47 (= C47), C59 (= C59), C97 (= C99), C100 (= C102), Q101 (≠ T103), C132 (= C134), C134 (= C136)
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q96 (= Q98), C134 (= C136)

3hrdD Crystal structure of nicotinate dehydrogenase (see paper)
41% identity, 100% coverage: 1:156/156 of query aligns to 4:158/160 of 3hrdD

query
sites
3hrdD

M

I

Q

T

V

I

Q

N

F

L

T

N

V

L

N

N

G

G

R

E

A

A

A

R

S

S

V

I

D

V

V

T

P

E

P

P

N

N

T

K

L

R

L

L

V

L

H

D

A

L

L

L

R

R

E

E

H

D

L

F

L

G

L

L

T

T

G

S

T

V

H

K

V
x
E

G

G

C
|
C

D
x
S

T
x
E

S
x
G

Q
x
E

C
|
C

G
|
G

A

A

C
|
C

T

T

V

V

H

I

V

F

N

N

G

G

R

D

A

P

V

V

K

T

S

T

C
|
C

A

C

M

M

L

L

A

A

V

G

Q

Q

A

A

Q

D

G

E

A

S

E

T

V

I

T

I

T

T

I

L

E

E

G

G

M

V

A

A

A

E

A

-

D

D

G

G

T

K

M

P

H

S

P

L

M

L

Q

Q

A

Q

A

C

F

F

K

L

E

E

C

A

H

G

G

A

L

V

Q
|
Q

C
|
C

G
|
G

F

Y

C
|
C

T

T

P

P

G

G

M

M

V

I

M

L

S

T

A

A

V

K

D

A

L

L

C

L

K

D

N

K

H

N

P

P

G

D

A

P

S

T

E

D

G

E

E

E

I

I

R

T

E

V

L

A

L

M

E

S

G

G

N

N

I

L

C
|
C

R

R

C
|
C

T

T

G

G

Y

Y

Q

I

N

K

I

I

V

H

R

A

A

A

V

V

Q

R

V

Y

G

A

Q

V

K

E

A

R

M

C

A

A

S

N

A

A

binding flavin-adenine dinucleotide: E44 (≠ T41), G45 (≠ S42), E46 (≠ Q43)
binding fe2/s2 (inorganic) cluster: E40 (≠ V37), C42 (= C39), S43 (≠ D40), G45 (≠ S42), C47 (= C44), G48 (= G45), C50 (= C47), C62 (= C59), Q100 (= Q98), C101 (= C99), G102 (= G100), C104 (= C102), C136 (= C134), C138 (= C136)
binding pterin cytosine dinucleotide: Q100 (= Q98), C138 (= C136)

1dgjA Crystal structure of the aldehyde oxidoreductase from desulfovibrio desulfuricans atcc 27774 (see paper)
45% identity, 91% coverage: 5:146/156 of query aligns to 6:149/906 of 1dgjA

query
sites
1dgjA

F

L

T

I

V

V

N

N

G

G

R

M

A

A

A

R

S

R

V

L

D

L

V

V

P

S

P

P

N

N

T

D

L

L

V

V

H

D

A

V

L

L

R

R

E

S

H

Q

L

L

L

Q

L

L

T

T

G

S

T

V

H

K

V
|
V

G
|
G

C
|
C

D
x
G

T

K

S
x
G

Q
|
Q

C
|
C

G
|
G

A

A

C
|
C

T

T

V

V

H

I

V

L

N

D

G

G

R

K

A

V

V

V

K
x
R

S

A

C
|
C

A

I

M

I

-

K

L

M

A

S

V

R

Q

V

A

A

Q

E

G

N

A

A

E

S

V

V

T

T

I

L

E

E

G

G

M

I

A

G

A

A

A

P

D

D

G

-

T

C

M

L

H

H

P

P

M

L

Q

Q

A

H

A

A

F

W

K

I

E

Q

C

H

H

G

G

A

L

A

Q
|
Q

C
|
C

G
|
G

F

F

C
|
C

T

T

P

P

G

G

M

F

V

I

M

V

S

S

A

A

V

K

D

A

L

L

C

L

K

D

N

E

H

N

P

V

G

A

A

P

S

S

E

R

G

E

E

D

I

V

R

R

E

D

L

W

L

F

E

Q

G

K

-

H

N

N

I

I

C
|
C

R

R

C
|
C

T

T

G

G

Y

Y

Q

K

N

P

I

L

V

V

R

D

A

A

V

V

binding fe2/s2 (inorganic) cluster: V38 (= V37), G39 (= G38), C40 (= C39), G41 (≠ D40), G43 (≠ S42), Q44 (= Q43), C45 (= C44), G46 (= G45), C48 (= C47), R58 (≠ K57), C60 (= C59), C100 (= C99), G101 (= G100), C103 (= C102), C137 (= C134), C139 (= C136)
binding pterin cytosine dinucleotide: Q99 (= Q98), C139 (= C136)

Sites not aligning to the query:

active site: 391, 427, 503, 507, 535, 869, 870
binding molybdenum (iv)oxide: 424, 535, 698, 869
binding pterin cytosine dinucleotide: 423, 424, 535, 652, 655, 656, 657, 658, 697, 698, 700, 702, 703, 799, 800, 803, 804, 807, 865, 866, 867, 868, 869

Q0QLF3 Nicotinate dehydrogenase small FeS subunit; NDH; Nicotinic acid hydroxylase small FeS subunit; NAH; EC 1.17.1.5 from Eubacterium barkeri (Clostridium barkeri) (see paper)
42% identity, 94% coverage: 1:147/156 of query aligns to 4:149/157 of Q0QLF3

query
sites
Q0QLF3

M

I

Q

T

V

I

Q

N

F

L

T

N

V

L

N

N

G

G

R

E

A

A

A

R

S

S

V

I

D

V

V

T

P

E

P

P

N

N

T

K

L

R

L

L

V

L

H

D

A

L

L

L

R

R

E

E

H

D

L

F

L

G

L

L

T

T

G

S

T

V

H

K

V

E

G

G

C
|
C

D

S

T

E

S

G

Q

E

C
|
C

G

G

A

A

C
|
C

T

T

V

V

H

I

V

F

N

N

G

G

R

D

A

P

V

V

K

T

S

T

C
|
C

A

C

M

M

L

L

A

A

V

G

Q

Q

A

A

Q

D

G

E

A

S

E

T

V

I

T

I

T

T

I

L

E

E

G

G

M

V

A

-

A

A

A

E

D

D

G

G

T

K

M

P

H

S

P

L

M

L

Q

Q

A

Q

A

C

F

F

K

L

E

E

C

A

H

G

G

A

L

V

Q

Q

C
|
C

G

G

F

Y

C
|
C

T

T

P

P

G

G

M

M

V

I

M

L

S

T

A

A

V

K

D

A

L

L

C

L

K

D

N

K

H

N

P

P

G

D

A

P

S

T

E

D

G

E

E

E

I

I

R

T

E

V

L

A

L

M

E

S

G

G

N

N

I

L

C
|
C

R

R

C
|
C

T

T

G

G

Y

Y

Q

I

N

K

I

I

V

H

R

A

A

A

V

V

Q

R

C42 (= C39) binding [2Fe-2S] cluster
C47 (= C44) binding [2Fe-2S] cluster
C50 (= C47) binding [2Fe-2S] cluster
C62 (= C59) binding [2Fe-2S] cluster
C101 (= C99) binding [2Fe-2S] cluster
C104 (= C102) binding [2Fe-2S] cluster
C136 (= C134) binding [2Fe-2S] cluster
C138 (= C136) binding [2Fe-2S] cluster

2w54A Crystal structure of xanthine dehydrogenase from rhodobacter capsulatus in complex with bound inhibitor pterin-6-aldehyde (see paper)
43% identity, 92% coverage: 1:144/156 of query aligns to 1:144/450 of 2w54A

query
sites
2w54A

M

M

Q

E

V

I

Q

A

F

F

T

L

V

L

N

N

G

G

R

E

A

T

A

R

S

R

V

V

D

R

V

I

-

E

P

D

P

P

N

T

T

Q

L

S

L

L

V

L

H

E

A

W

L

L

R

R

E

A

H

E

L

G

L

L

L

-

T

T

G

G

T

T

H

K

V

E

G
|
G

C
|
C

D
x
N

T

E

S
x
G

Q

D

C
|
C

G
|
G

A

A

C
|
C

T

T

V

V

H

M

V

I

N

R

-

D

-

A

-

G

G

S

R

R

A

A

V

V

K

N

S

A

C
|
C

A

L

M

M

L

M

A

L

V

P

Q

Q

A

I

Q

A

G

G

A

K

E

A

V

L

T

R

T

T

I

I

E

E

G

G

M

I

A

A

A

P

D

D

G

G

T

R

M

L

H

H

P

P

M

V

Q

Q

A

Q

A

A

F

M

K

I

E

D

C

H

H

H

G

G

L

S

Q
|
Q

C
|
C

G
|
G

F

F

C
|
C

T

T

P

P

G

G

M

F

V

I

M

V

S

S

A

-

V

-

D

-

L

M

C

A

K

A

N

A

H

H

P

-

G

D

A

R

S

D

E

R

G

K

E

D

I

Y

R

D

E

D

L

L

E

A

G

G

N

N

I

L

C
|
C

R
|
R

C
|
C

T

T

G

G

Y

Y

Q

A

N

P

I

I

V

L

R

R

binding flavin-adenine dinucleotide: G42 (≠ S42)
binding fe2/s2 (inorganic) cluster: G38 (= G38), C39 (= C39), N40 (≠ D40), G42 (≠ S42), C44 (= C44), G45 (= G45), C47 (= C47), C63 (= C59), C103 (= C99), G104 (= G100), C106 (= C102), C134 (= C134), R135 (= R135), C136 (= C136)
binding {[(5aR,8R,9aR)-2-amino-4-oxo-6,7-di(sulfanyl-kappaS)-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridin-8-yl]methyl dihydrogenato(2-) phosphate}(hydroxy)oxo(thioxo)molybdenum: Q102 (= Q98), C136 (= C136)

Sites not aligning to the query:

binding flavin-adenine dinucleotide: 189, 191, 192, 193, 194, 195, 196, 199, 213, 258, 259, 267, 268, 271, 272, 274, 275, 280, 281, 318, 324, 347

1jroA Crystal structure of xanthine dehydrogenase from rhodobacter capsulatus (see paper)
43% identity, 92% coverage: 1:144/156 of query aligns to 1:144/450 of 1jroA

query
sites
1jroA

M

M

Q

E

V

I

Q

A

F

F

T

L

V

L

N

N

G

G

R

E

A

T

A

R

S

R

V

V

D

R

V

I

-

E

P

D

P

P

N

T

T

Q

L

S

L

L

V

L

H

E

A

L

L

L

R

R

E

A

H

E

L

G

L

L

L

-

T

T

G

G

T

T

H

K

V
x
E

G
|
G

C
|
C

D
x
N

T

E

S
x
G

Q
x
D

C
|
C

G
|
G

A

A

C
|
C

T

T

V

V

H

M

V

I

N

R

-

D

-

A

-

G

G

S

R

R

A

A

V

V

K

N

S

A

C
|
C

A

L

M

M

L

M

A

L

V

P

Q

Q

A

I

Q

A

G

G

A

K

E

A

V

L

T

R

T

T

I

I

E

E

G

G

M

I

A

A

A

P

D

D

G

G

T

R

M

L

H

H

P

P

M

V

Q

Q

A

Q

A

A

F

M

K

I

E

D

C

H

H

H

G

G

L

S

Q

Q

C
|
C

G

G

F

F

C
|
C

T

T

P

P

G

G

M

F

V

I

M

V

S

S

A

-

V

-

D

-

L

M

C

A

K

A

N

A

H

H

P

-

G

D

A

R

S

D

E

R

G

K

E

D

I

Y

R

D

E

D

L

L

E

A

G

G

N

N

I

L

C
|
C

R

R

C
|
C

T

T

G

G

Y

Y

Q

A

N

P

I

I

V

L

R

R

binding flavin-adenine dinucleotide: G42 (≠ S42), D43 (≠ Q43)
binding fe2/s2 (inorganic) cluster: E37 (≠ V37), G38 (= G38), C39 (= C39), N40 (≠ D40), G42 (≠ S42), C44 (= C44), G45 (= G45), C47 (= C47), C63 (= C59), C103 (= C99), C106 (= C102), C134 (= C134), C136 (= C136)

Sites not aligning to the query:

binding flavin-adenine dinucleotide: 189, 191, 192, 193, 194, 195, 196, 258, 259, 268, 271, 272, 274, 280, 281, 318, 324

4usaA Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with trans-cinnamaldehyde (see paper)
41% identity, 94% coverage: 1:146/156 of query aligns to 2:149/907 of 4usaA

query
sites
4usaA

M

I

Q

Q

V

K

Q

V

F

I

T

T

V

V

N

N

G

G

R

I

A

E

A

Q

S

N

V

L

D

F

V

V

P

D

P

A

N

E

T

A

L

L

V

S

H

D

A

V

L

L

R

R

E

Q

H

Q

L

L

L

G

L

L

T

T

G

G

T

V

H

K

V
|
V

G

G

C
|
C

D
x
E

T

Q

S
x
G

Q

Q

C
|
C

G
|
G

A

A

C
|
C

T

S

V

V

H

I

V

L

N

D

G

G

R

K

A

V

V

V

K
x
R

S

A

C
|
C

A

V

M

T

-

K

L

M

A

K

V

R

Q

V

A

A

Q

D

G

G

A

A

E

Q

V

I

T

T

I

I

E

E

G

G

M

V

A

G

A

Q

A

P

D

E

G

-

T

N

M

L

H

H

P

P

M

L

Q

Q

A

K

A

A

F

W

K

V

E

L

C

H

H

G

G

G

L

A

Q
|
Q

C
|
C

G
|
G

F

F

C
|
C

T

S

P

P

G

G

M

F

V

I

M

V

S

S

A

A

V

K

D

G

L

L

C

L

K

D

N

T

H

N

P

A

G

D

A

P

S

S

E

R

G

E

E

D

I

V

R

R

E

D

L

W

L

F

E

Q

G

K

-

H

-

R

N

N

I

A

C
|
C

R

R

C
|
C

T

T

G

G

Y

Y

Q

K

N

P

I

L

V

V

R

D

A

A

V

V

binding fe2/s2 (inorganic) cluster: V38 (= V37), C40 (= C39), E41 (≠ D40), G43 (≠ S42), C45 (= C44), G46 (= G45), C48 (= C47), R58 (≠ K57), C60 (= C59), C100 (= C99), G101 (= G100), C103 (= C102), C137 (= C134), C139 (= C136)
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q98), C139 (= C136)

Sites not aligning to the query:

active site: 390, 425, 501, 505, 533, 869, 870
binding bicarbonate ion: 460, 531, 532, 535, 539
binding hydrocinnamic acid: 255, 425, 494, 497, 535, 626
binding magnesium ion: 899, 903
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 420, 421, 422, 533, 650, 653, 654, 655, 656, 695, 696, 697, 700, 701, 799, 800, 804, 807, 865, 866, 867, 868, 869

4us9A Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with 3- phenylpropionaldehyde (see paper)
41% identity, 94% coverage: 1:146/156 of query aligns to 2:149/907 of 4us9A

query
sites
4us9A

M

I

Q

Q

V

K

Q

V

F

I

T

T

V

V

N

N

G

G

R

I

A

E

A

Q

S

N

V

L

D

F

V

V

P

D

P

A

N

E

T

A

L

L

V

S

H

D

A

V

L

L

R

R

E

Q

H

Q

L

L

L

G

L

L

T

T

G

G

T

V

H

K

V
|
V

G

G

C
|
C

D
x
E

T

Q

S
x
G

Q

Q

C
|
C

G
|
G

A

A

C
|
C

T

S

V

V

H

I

V

L

N

D

G

G

R

K

A

V

V

V

K
x
R

S

A

C
|
C

A

V

M

T

-

K

L

M

A

K

V

R

Q

V

A

A

Q

D

G

G

A

A

E

Q

V

I

T

T

I

I

E

E

G

G

M

V

A

G

A

Q

A

P

D

E

G

-

T

N

M

L

H

H

P

P

M

L

Q

Q

A

K

A

A

F

W

K

V

E

L

C

H

H

G

G

G

L

A

Q
|
Q

C
|
C

G
|
G

F

F

C
|
C

T

S

P

P

G

G

M

F

V

I

M

V

S

S

A

A

V

K

D

G

L

L

C

L

K

D

N

T

H

N

P

A

G

D

A

P

S

S

E

R

G

E

E

D

I

V

R

R

E

D

L

W

L

F

E

Q

G

K

-

H

-

R

N

N

I

A

C
|
C

R

R

C
|
C

T

T

G

G

Y

Y

Q

K

N

P

I

L

V

V

R

D

A

A

V

V

binding fe2/s2 (inorganic) cluster: V38 (= V37), C40 (= C39), E41 (≠ D40), G43 (≠ S42), C45 (= C44), G46 (= G45), C48 (= C47), R58 (≠ K57), C60 (= C59), C100 (= C99), G101 (= G100), C103 (= C102), C137 (= C134), C139 (= C136)
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q98), C139 (= C136)

Sites not aligning to the query:

active site: 390, 425, 501, 505, 533, 869, 870
binding 3-phenylpropanal: 255, 257, 258, 752
binding bicarbonate ion: 460, 498, 531, 532, 535, 539, 890, 892
binding magnesium ion: 899, 903
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 420, 421, 422, 533, 650, 653, 654, 655, 656, 695, 696, 697, 700, 701, 799, 800, 804, 807, 865, 866, 867, 868, 869

Query Sequence

>Ac3H11_3590 FitnessBrowser__acidovorax_3H11:Ac3H11_3590
MQVQFTVNGRAASVDVPPNTLLVHALREHLLLTGTHVGCDTSQCGACTVHVNGRAVKSCA
MLAVQAQGAEVTTIEGMAAADGTMHPMQAAFKECHGLQCGFCTPGMVMSAVDLCKNHPGA
SEGEIRELLEGNICRCTGYQNIVRAVQVGQKAMASA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory