Comparing Ac3H11_3862 FitnessBrowser__acidovorax_3H11:Ac3H11_3862 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
67% identity, 97% coverage: 5:404/414 of query aligns to 12:411/420 of P00861
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
67% identity, 97% coverage: 5:404/414 of query aligns to 11:410/419 of 1ko0A
1knwA Crystal structure of diaminopimelate decarboxylase
67% identity, 97% coverage: 5:404/414 of query aligns to 11:410/421 of 1knwA
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
33% identity, 95% coverage: 19:411/414 of query aligns to 13:398/405 of B4XMC6
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
34% identity, 95% coverage: 10:403/414 of query aligns to 4:376/386 of Q9X1K5
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
34% identity, 95% coverage: 10:403/414 of query aligns to 3:375/385 of 2yxxA
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
33% identity, 95% coverage: 19:411/414 of query aligns to 11:390/394 of 3c5qA
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
31% identity, 97% coverage: 13:412/414 of query aligns to 28:432/438 of Q58497
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
31% identity, 97% coverage: 13:412/414 of query aligns to 24:428/434 of 1tufA
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
31% identity, 97% coverage: 13:412/414 of query aligns to 24:428/434 of 1twiA
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
31% identity, 95% coverage: 13:407/414 of query aligns to 21:409/418 of 4xg1B
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
30% identity, 94% coverage: 18:407/414 of query aligns to 24:384/393 of 4xg1A
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
30% identity, 95% coverage: 20:414/414 of query aligns to 31:422/422 of 6n2aA
7ru7A Crystal structure of btrk, a decarboxylase involved in butirosin biosynthesis
28% identity, 98% coverage: 8:412/414 of query aligns to 6:411/412 of 7ru7A
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
30% identity, 97% coverage: 10:412/414 of query aligns to 30:445/446 of 1hkvA
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
30% identity, 97% coverage: 10:412/414 of query aligns to 31:446/447 of P9WIU7
8d5dA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- arginine (see paper)
28% identity, 99% coverage: 5:414/414 of query aligns to 31:456/458 of 8d5dA
8d88A Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- lysine (see paper)
28% identity, 99% coverage: 5:414/414 of query aligns to 32:460/461 of 8d88A
8d4iA Structure of y430f d-ornithine/d-lysine decarboxylase complex with putrescine (see paper)
28% identity, 99% coverage: 5:414/414 of query aligns to 32:460/462 of 8d4iA
8d5rA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- ornithine (see paper)
28% identity, 99% coverage: 5:414/414 of query aligns to 32:458/461 of 8d5rA
>Ac3H11_3862 FitnessBrowser__acidovorax_3H11:Ac3H11_3862
MSNPFSPAQLWALADQFGTPLWVYDAATIRQRIAQVSNFETIRFAQKACSNIHILKLMRE
QGVKVDAVSRGEILRALAAGYVAGGEPSEIVFTADLFDAATLDCVVEHGVPVNAGSIDML
HQLGARSPGHAVWLRINPGFGHGHSNKTNTGGEHSKHGIWHTDLPAALAAIKQHGLKLVG
LHMHIGSGVDYSHLQEVCGAMVNLVRTAHAAGHDLHAISAGGGLSIPYRSGDPVVDTQHY
HGLWDAARQQAEAIVGHKLGLEIEPGRFLVAESGVLLGQVRATKDAGNNHFVLVDTGFNE
LMRPSMYGSYHAMSVLRRDGTQAAEQPSVVAGPLCESGDVFTQGDGGVVLPRDLPAAQVG
DLLVIHDTGAYGASMSSNYNTRPLIAEVLVDGGQARLIRRRQTVDELLALEIGL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory