SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ac3H11_3931 FitnessBrowser__acidovorax_3H11:Ac3H11_3931 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

8gxkB Pseudomonas jinjuensis n-acetyltransferase (see paper)
37% identity, 92% coverage: 6:186/196 of query aligns to 5:182/188 of 8gxkB

query
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8gxkB
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1yreB Hypothetical protein pa3270 from pseudomonas aeruginosa in complex with coa
35% identity, 92% coverage: 6:186/196 of query aligns to 5:182/187 of 1yreB

query
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1yreB
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8gxfB Pseudomonas flexibilis gcn5 family acetyltransferase (see paper)
32% identity, 93% coverage: 5:186/196 of query aligns to 4:182/187 of 8gxfB

query
sites
8gxfB
E
 
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L

Query Sequence

>Ac3H11_3931 FitnessBrowser__acidovorax_3H11:Ac3H11_3931
MAFVEPITLRDRGVRLEPLALSHEEGLRLAAADGELWKLRVTSVPEPQDTRAYIETALAT
RDRFAFAVVDEATNAVLGSTSYHDILPAARRVEIGYTWYRQSVQRSHVNTTCKLLMMGHA
FDTLGCHVVGWRTDNYNFASQKAIERLGAKKDGVIRGHALRRDGTIRDTVMYSMRTGEWP
EARAQLLYLLERNKPA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory