Comparing Ac3H11_3953 D-galactarate dehydratase (EC 4.2.1.42) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
56% identity, 99% coverage: 5:525/525 of query aligns to 4:460/460 of 6u7lA
>Ac3H11_3953 D-galactarate dehydratase (EC 4.2.1.42)
MNRPALTIRMHPDDNVAIVANDGGLPAGTVLPPGVPGAGITLRDKVPQGHKVALSDMAEG
DVVRRYNVPIGYALKAIPAGSWVHERLLQMPSARALEGLPMATVKPPVLEPLTGYTFEGY
RNADGSVGTRNILAITTTVQCVAGVVANAVRRIKDELLPLYPQVDDVIGLEHTYGCGVAI
DAPDAIIPIRTLRNISLNPNFGGEVMVVSLGCEKLQPDRLLPAGSFPIADERDAALGPET
VCLQADEHVGFMSMLDHIVQSARPHLERLNARRRETIRASELVLGVQCGGSDAFSGVTAN
PAVGFCADLLVRAGATVMFSENTEVRDAVEQLTSRAATPEVAESIVRELGWYDRYLDRGR
VDRAANTTPGNKAGGLSNIAEKAMGSIIKSGTAPISHVLAPGEKLRRDQRGLVYAATPAS
DFICGTLQLAAGMNLHVFTTGRGTPYGLAECPVVKVATRTDLARRWHDLMDINAGKIADG
EASIEELGWEMFHLLLDVASGRKKTWAEQWKLHNALVLFNPAPVT
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory