Comparing Ac3H11_4104 FitnessBrowser__acidovorax_3H11:Ac3H11_4104 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
3dmeA Crystal structure of conserved exported protein from bordetella pertussis. Northeast structural genomics target ber141
63% identity, 98% coverage: 5:363/365 of query aligns to 3:363/366 of 3dmeA
8w78A Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase in complex with fad and 2-oxoglutarate (see paper)
30% identity, 95% coverage: 18:362/365 of query aligns to 16:400/410 of 8w78A
Sites not aligning to the query:
8w7fB Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase bound with fad and a sulfate ion (see paper)
30% identity, 95% coverage: 18:362/365 of query aligns to 16:402/412 of 8w7fB
Sites not aligning to the query:
4x9mA Oxidized l-alpha-glycerophosphate oxidase from mycoplasma pneumoniae with fad bound (see paper)
27% identity, 99% coverage: 6:365/365 of query aligns to 5:365/384 of 4x9mA
P75063 Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) (Mycoplasmoides pneumoniae) (see paper)
27% identity, 99% coverage: 6:365/365 of query aligns to 5:365/384 of P75063
8p84B X-ray structure of thermoanaerobacterales bacterium monoamine oxidase (see paper)
40% identity, 22% coverage: 2:83/365 of query aligns to 1:75/450 of 8p84B
Sites not aligning to the query:
>Ac3H11_4104 FitnessBrowser__acidovorax_3H11:Ac3H11_4104
MTDAVDCVVVGAGVVGLAVARALALQGREVMVLEAADAIGTGISSRNSEVIHAGLYYPTG
SIKAQLCVRGKELLYAYCAERGVPHRRCGKLLVATSAAQLASVESIQARAQANGVLDLQW
LSRDEALALEPALECVGALYSPSTGIVDSHALMLALQGDLENAGGLVAVNSPLARAHIAE
GAINLEASDGTRLQARTVVNAAGLYAPALAARFVGLDPAHVPTAHFAKGSYFTLTGKAPF
SHLIYPVPEAAGLGVHLTLDLGGQAKFGPDVQWVTSADDLLVDPARGDAFYAEVRKYWPG
LRDGALAPGYAGIRPKIHGASQPAADFVIQGPAVHGVPGLVNLFGIESPGLTSSLAIAEH
VAALV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory