Comparing Ac3H11_4175 FitnessBrowser__acidovorax_3H11:Ac3H11_4175 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
34% identity, 90% coverage: 7:383/421 of query aligns to 8:382/427 of 8b01B
>Ac3H11_4175 FitnessBrowser__acidovorax_3H11:Ac3H11_4175
MITTLFFLAALMVGVPIGVCLCLSGAVYILSIGSPVLFQSFPMQMFGGVDSYGLIAIPLF
ILIGEIMNSGGITRRLVDLSMAFIGSVKGGLAYVNILANMLVSSIIGSATAQVAIMSQVM
VPEMEKQGYDKTFAAGLTVYGGMLGPIIPPSVMFVVYSVLAQVAVGDMLIAGILPGVLLT
LLFFVVIALMGFVYNYPRSEKRTLAQRARTVVQASPTLLIPIIIVGSILSGLANPTESAA
VGALASALVGRYVTKEFRFSAMPAILLRSAIYSAIVLFLVAAAAVFSWLLIYGKVPQMVA
AWVQTVAHDPVTFLLLTNVILLVIGTVIDGIPGLIMTAPILLPIATEVYHIDPRHFGVVI
VVNLVLGLMTPPVGLSFFVASAVTGAKPGKMFIVTLPFFIISCVALVMLSLFPSLSLGLL
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Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory