Comparing Ac3H11_4182 FitnessBrowser__acidovorax_3H11:Ac3H11_4182 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
23% identity, 46% coverage: 196:388/420 of query aligns to 274:470/514 of P02916
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
23% identity, 46% coverage: 196:388/420 of query aligns to 259:455/490 of 4ki0F
>Ac3H11_4182 FitnessBrowser__acidovorax_3H11:Ac3H11_4182
MQATLAHPIANAPTGSPPGALRQALARAESRRKWRAFALTLPLLVFLLLTLLVPIAALLQ
RAVENPEVANALPTTMRALGGWDRKDAPAATAYAALAQDLARLPESSDAGALARRLNTEV
PGARSMVMGAYRALPLEGTPEAIRAQLVDKDPRWAEAPLWQAIAKNGARWTPDYLLASVD
LQRDALGHIERMPEEQRAFGGILLRTFHISLVVTLVCLLLGYPLAWWLASLPARPANVLM
ILVLVPFWTSILVRVAAWIVLLQSEGLVNRGLMGLGLIEQPLALLFNRTGVVIAMVHILL
PFMILPLYSVMKSVPPTYLRAAVSLGSSPMAAFFRVYVPQTYPGIGAGVLLVFILAIGYY
VTPALLGGADDQMLSYYIARYTNVEVNWGMACALGALLLAATLVLYGVYRRFGKAELSLG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory