SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ac3H11_4182 FitnessBrowser__acidovorax_3H11:Ac3H11_4182 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
23% identity, 46% coverage: 196:388/420 of query aligns to 274:470/514 of P02916

query
sites
P02916
Q
 
Q
R
 
K
A
 
P
F
 
F
G
 
L
G
 
A
I
 
I
L
 
F
L
 
V
R
 
W
T
 
T
F
 
V
H
 
V
I
 
F
S
 
S
L
 
L
V
 
I
V
 
T
T
 
V
L
 
F
V
 
L
C
 
T
L
 
V
L
 
A
L
 
V
G
 
G
Y
 
M
P
 
V
L
 
L
A
 
A
W
 
C
W
 
L
L
 
V
A
 
Q
S
 
W
L
 
E
P
 
A
A
 
L
R
 
R
P
 
G
A
 
K
N
 
A
V
 
V
L
 
Y
M
 
R
I
 
V
L
 
L
V
 
L
L
 
I
V
 
L
P
 
P
F
 
Y
W
 
-
T
 
-
S
 
-
I
 
-
L
 
-
V
 
-
R
 
A
V
 
V
A
 
P
A
 
S
W
 
F
I
 
I
V
 
S
L
 
I
L
|
L
Q
 
I
S
 
F
E
 
K
G
 
G
L
 
L
V
 
F
N
 
N
R
 
Q
G
 
S
L
 
F
M
 
-
G
 
-
L
 
-
G
 
G
L
 
E
I
 
I
E
 
N
Q
 
M
P
 
M
L
 
L
A
 
S
L
 
A
L
 
L
F
 
F
N
 
G
-
 
V
-
 
K
-
 
P
-
 
A
-
 
W
-
 
F
-
 
S
-
 
D
-
 
P
-
 
T
-
 
T
-
 
A
R
 
R
T
 
T
G
 
M
V
x
L
V
 
I
I
 
I
A
 
V
M
x
N
V
 
T
H
 
W
I
 
L
L
x
G
L
 
Y
P
 
P
F
 
Y
M
 
M
I
 
M
L
 
I
P
 
L
L
 
C
Y
 
M
S
 
G
V
 
L
M
 
L
K
 
K
S
 
A
V
 
I
P
 
P
P
 
D
T
 
D
Y
 
L
L
 
Y
R
x
E
A
 
A
A
x
S
V
 
A
S
 
M
L
 
D
G
|
G
S
 
A
S
 
G
P
 
P
M
 
F
A
 
Q
A
 
N
F
 
F
F
 
F
R
 
K
V
 
I
Y
 
T
V
 
L
P
|
P
Q
 
L
T
 
L
Y
 
I
P
 
K
G
 
P
I
 
L
G
 
T
A
 
P
G
 
L
V
 
M
L
 
I
L
 
A
V
 
S
F
 
F
I
 
A
L
 
F
A
 
N
I
 
F
G
 
N
Y
 
N
Y
 
F
V
 
V
T
 
L
P
 
I
A
 
Q
L
 
L
L
 
L
-
 
T
G
 
N
G
 
G
A
 
G
D
 
P
D
 
D
Q
 
R
M
 
L
L
 
G
S
 
T
Y
 
T
Y
 
T
I
 
P
A
 
A
R
 
G
Y
 
Y
T
 
T
N
 
D
V
 
L
E
 
L
V
 
V
N
 
N
W
 
Y

4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
23% identity, 46% coverage: 196:388/420 of query aligns to 259:455/490 of 4ki0F

query
sites
4ki0F
Q
 
Q
R
 
K
A
 
P
F
 
F
G
 
L
G
 
A
I
 
I
L
 
F
L
 
V
R
 
W
T
 
T
F
 
V
H
 
V
I
 
F
S
 
S
L
 
L
V
 
I
V
 
T
T
 
V
L
 
F
V
 
L
C
 
T
L
 
V
L
 
A
L
 
V
G
 
G
Y
 
M
P
 
V
L
 
L
A
 
A
W
 
C
W
 
L
L
 
V
A
 
Q
S
 
W
L
 
E
P
 
A
A
 
L
R
 
R
P
 
G
A
 
K
N
 
A
V
 
V
L
 
Y
M
 
R
I
 
V
L
 
L
V
 
L
L
 
I
V
 
L
P
 
P
F
x
Y
W
 
-
T
 
-
S
 
-
I
 
-
L
 
-
V
 
-
R
 
A
V
 
V
A
 
P
A
 
S
W
 
F
I
 
I
V
 
S
L
 
I
L
 
L
Q
 
I
S
 
F
E
 
K
G
 
G
L
 
L
V
 
F
N
 
N
R
 
Q
G
 
S
L
 
F
M
 
-
G
 
-
L
 
-
G
 
G
L
 
E
I
 
I
E
 
N
Q
 
M
P
 
M
L
 
L
A
 
S
L
 
A
L
 
L
F
 
F
N
 
G
-
 
V
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K
-
 
P
-
 
A
-
 
W
-
 
F
-
 
S
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D
-
 
P
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T
-
 
T
-
 
A
R
 
R
T
 
T
G
 
M
V
 
L
V
 
I
I
 
I
A
 
V
M
x
N
V
 
T
H
 
W
I
 
L
L
x
G
L
 
Y
P
 
P
F
x
Y
M
 
M
I
 
M
L
 
I
P
 
L
L
 
C
Y
 
M
S
 
G
V
 
L
M
 
L
K
 
K
S
 
A
V
 
I
P
 
P
P
 
D
T
 
D
Y
 
L
L
 
Y
R
 
E
A
 
A
A
 
S
V
 
A
S
 
M
L
 
D
G
 
G
S
 
A
S
 
G
P
 
P
M
 
F
A
 
Q
A
 
N
F
 
F
F
 
F
R
 
K
V
 
I
Y
 
T
V
 
L
P
 
P
Q
 
L
T
 
L
Y
 
I
P
 
K
G
 
P
I
 
L
G
 
T
A
 
P
G
 
L
V
 
M
L
 
I
L
 
A
V
x
S
F
 
F
I
 
A
L
 
F
A
x
N
I
 
F
G
 
N
Y
 
N
Y
 
F
V
 
V
T
 
L
P
 
I
A
 
Q
L
 
L
L
 
L
-
 
T
G
 
N
G
 
G
A
 
G
D
 
P
D
 
D
Q
 
R
M
 
L
L
 
G
S
 
T
Y
 
T
Y
 
T
I
 
P
A
 
A
R
 
G
Y
 
Y
T
 
T
N
 
D
V
 
L
E
 
L
V
 
V
N
 
N
W
 
Y

Query Sequence

>Ac3H11_4182 FitnessBrowser__acidovorax_3H11:Ac3H11_4182
MQATLAHPIANAPTGSPPGALRQALARAESRRKWRAFALTLPLLVFLLLTLLVPIAALLQ
RAVENPEVANALPTTMRALGGWDRKDAPAATAYAALAQDLARLPESSDAGALARRLNTEV
PGARSMVMGAYRALPLEGTPEAIRAQLVDKDPRWAEAPLWQAIAKNGARWTPDYLLASVD
LQRDALGHIERMPEEQRAFGGILLRTFHISLVVTLVCLLLGYPLAWWLASLPARPANVLM
ILVLVPFWTSILVRVAAWIVLLQSEGLVNRGLMGLGLIEQPLALLFNRTGVVIAMVHILL
PFMILPLYSVMKSVPPTYLRAAVSLGSSPMAAFFRVYVPQTYPGIGAGVLLVFILAIGYY
VTPALLGGADDQMLSYYIARYTNVEVNWGMACALGALLLAATLVLYGVYRRFGKAELSLG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory