Comparing Ac3H11_4901 amino acid ABC transporter, permease protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 93% coverage: 5:213/224 of query aligns to 3:207/214 of 4ymwC
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
35% identity, 93% coverage: 5:213/224 of query aligns to 3:207/215 of 4ymtC
>Ac3H11_4901 amino acid ABC transporter, permease protein
MLIQLDFSAVLSAWPLLVRGVVWTIGLTIVGTGLGLLLGTACAWARARNLGHRPTALRWA
VASYVELVRNTPFIVQLFFLFFGLPALGLKLSPEFASVLAMVINLGAYSAEIIRAGIEAT
PRGQIEAAHSLALTPGQTFRRVVLPPALQKVWPAMVSQIIIVMLGSAVCGQISTPELSYA
ANLISSNTFRAFEAFILATAVYLVLSMLTRRLLMWVGARFLVGR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory