Comparing Ac3H11_552 FitnessBrowser__acidovorax_3H11:Ac3H11_552 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3ip9A Structure of atu2422-gaba receptor in complex with gaba (see paper)
34% identity, 90% coverage: 35:378/384 of query aligns to 3:338/348 of 3ip9A
3ip7A Structure of atu2422-gaba receptor in complex with valine (see paper)
34% identity, 90% coverage: 35:378/384 of query aligns to 3:338/348 of 3ip7A
3ip6A Structure of atu2422-gaba receptor in complex with proline (see paper)
34% identity, 90% coverage: 35:378/384 of query aligns to 3:338/348 of 3ip6A
3ip5A Structure of atu2422-gaba receptor in complex with alanine (see paper)
34% identity, 90% coverage: 35:378/384 of query aligns to 3:338/348 of 3ip5A
3ipcA Structure of atu2422-gaba f77a mutant receptor in complex with leucine (see paper)
34% identity, 90% coverage: 35:378/384 of query aligns to 3:338/348 of 3ipcA
1uskA L-leucine-binding protein with leucine bound (see paper)
31% identity, 86% coverage: 35:365/384 of query aligns to 3:326/345 of 1uskA
1usiA L-leucine-binding protein with phenylalanine bound (see paper)
31% identity, 86% coverage: 35:365/384 of query aligns to 3:326/345 of 1usiA
4n0qB Crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic)
26% identity, 91% coverage: 35:383/384 of query aligns to 3:345/345 of 4n0qB
1z18A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound valine (see paper)
30% identity, 64% coverage: 33:276/384 of query aligns to 1:240/344 of 1z18A
1z17A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound ligand isoleucine (see paper)
30% identity, 64% coverage: 33:276/384 of query aligns to 1:240/344 of 1z17A
Sites not aligning to the query:
1z16A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound leucine (see paper)
30% identity, 64% coverage: 33:276/384 of query aligns to 1:240/344 of 1z16A
Sites not aligning to the query:
4q6wA Crystal structure of periplasmic binding protein type 1 from bordetella pertussis tohama i complexed with 3-hydroxy benzoic acid
27% identity, 91% coverage: 34:383/384 of query aligns to 3:372/376 of 4q6wA
4gnrA 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. Canada mdr_19a in complex with isoleucine
31% identity, 86% coverage: 33:361/384 of query aligns to 1:322/348 of 4gnrA
4q6bA Crystal structure of abc transporter substrate-binding protein fromdesulfitobacterium hafniense complex with leu
25% identity, 84% coverage: 56:378/384 of query aligns to 20:330/335 of 4q6bA
3td9A Crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution
26% identity, 90% coverage: 34:379/384 of query aligns to 1:338/350 of 3td9A
4mlcA Abc transporter substrate-binding protein fromdesulfitobacterium hafniense
31% identity, 39% coverage: 56:205/384 of query aligns to 20:166/336 of 4mlcA
4rdcA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with proline
26% identity, 61% coverage: 34:269/384 of query aligns to 2:235/364 of 4rdcA
Sites not aligning to the query:
4qymA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with methionine
26% identity, 61% coverage: 34:269/384 of query aligns to 2:235/364 of 4qymA
Sites not aligning to the query:
4otzA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with cystein
26% identity, 61% coverage: 34:269/384 of query aligns to 2:235/364 of 4otzA
Sites not aligning to the query:
4og2A The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with leucine
26% identity, 61% coverage: 34:269/384 of query aligns to 2:235/364 of 4og2A
Sites not aligning to the query:
>Ac3H11_552 FitnessBrowser__acidovorax_3H11:Ac3H11_552
VFCPAFASSPLFRISALTAVALAASVASAQDVQTVKIAHAGPVSGGIAHIGKDTENGVRL
AIDDLNAQNLVIGGKKIKFEIAAEDDAGDPRQATAVAQKLCDQKVAGVVGHLQSGTSIPA
SAIYAKCDLPHITASASNPDLTKPGHKTTFRLIANDNALGAALALFGADHQKLKSVAIID
DRTAYGQGVASVFKATAQQKGLKVVAEEFTNDKATDFMAILTAIKNKKPDAIFYGGLDAQ
AGPMLRQMEQLGLGNVKYFGGDALCTEKLPELSGKTPALKNVTCATGGASVDKMQGGADW
KKRYDAKFPGQFQIYSPYAYDAAMVLADAMKRANSVDPKVFAPFLAKTEYKGVTANIAFT
AKGELTTPAVTLYTFKDGSRVALN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory