Comparing Ac3H11_631 FitnessBrowser__acidovorax_3H11:Ac3H11_631 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
47% identity, 98% coverage: 1:345/351 of query aligns to 1:338/343 of P30750
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
46% identity, 98% coverage: 1:345/351 of query aligns to 2:339/344 of 3tuzC
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
46% identity, 98% coverage: 1:345/351 of query aligns to 2:339/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
46% identity, 98% coverage: 1:345/351 of query aligns to 2:339/344 of 6cvlD
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
45% identity, 70% coverage: 1:245/351 of query aligns to 2:240/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
43% identity, 66% coverage: 16:245/351 of query aligns to 12:240/240 of 4ymuJ
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
41% identity, 70% coverage: 1:245/351 of query aligns to 3:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
41% identity, 70% coverage: 1:245/351 of query aligns to 3:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
41% identity, 70% coverage: 1:245/351 of query aligns to 3:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
41% identity, 70% coverage: 1:245/351 of query aligns to 3:242/242 of 2oljA
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
44% identity, 59% coverage: 1:206/351 of query aligns to 1:202/219 of 8w6iD
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
44% identity, 59% coverage: 1:206/351 of query aligns to 1:202/222 of P0A9R7
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
41% identity, 62% coverage: 1:219/351 of query aligns to 1:215/218 of 8hd0A
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
44% identity, 62% coverage: 16:233/351 of query aligns to 13:241/258 of 1b0uA
Sites not aligning to the query:
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
44% identity, 62% coverage: 16:233/351 of query aligns to 17:245/258 of P02915
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
37% identity, 63% coverage: 1:220/351 of query aligns to 3:218/229 of 6z67B
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
37% identity, 63% coverage: 1:220/351 of query aligns to 3:218/230 of 6z4wA
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
40% identity, 63% coverage: 1:220/351 of query aligns to 1:216/222 of 8i6rB
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
36% identity, 62% coverage: 25:243/351 of query aligns to 46:265/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
36% identity, 62% coverage: 25:243/351 of query aligns to 46:265/382 of 7aheC
Sites not aligning to the query:
>Ac3H11_631 FitnessBrowser__acidovorax_3H11:Ac3H11_631
MIDLRGITQTYQGPQGPVEALRGIDLTIQPGEVFGIIGKSGAGKSSLVRVINLLNRPTTG
QVIVGGRDLTQLNDAQLREARREIGMVFQHFNLLSSRTVFDNAALPLELAGMSKTDIRER
VNPLLELVGLDHLADRYPAQISGGQKQRVGIARALASRPKVLLSDEATSALDPETTRSIL
DLLRQVNRELGLTVVLITHQMQVIKQVADHVAVIEAGRIVEQGRVLDVFTRPQQAITKSL
IDEILPQELPVSVLDHVRKLTRQLATTAPDHAGRLLRLSYSGDSAYQPILSQLIREFGVD
MSILHGQVDEIQDETFGSLAVYASGEPMQVRGAVEHLRAGGVAVQEVTIEI
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory