Comparing Ac3H11_694 FitnessBrowser__acidovorax_3H11:Ac3H11_694 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
35% identity, 91% coverage: 19:330/341 of query aligns to 2:321/330 of P0AAH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
35% identity, 86% coverage: 20:312/341 of query aligns to 3:287/310 of 4fwiB
Sites not aligning to the query:
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
35% identity, 86% coverage: 20:312/341 of query aligns to 4:298/326 of Q8RDH4
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 77% coverage: 20:280/341 of query aligns to 1:256/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 77% coverage: 20:280/341 of query aligns to 2:257/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
34% identity, 77% coverage: 20:280/341 of query aligns to 2:257/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
34% identity, 77% coverage: 20:280/341 of query aligns to 2:257/344 of 3tuiC
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
34% identity, 74% coverage: 19:271/341 of query aligns to 2:247/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
34% identity, 74% coverage: 19:271/341 of query aligns to 2:247/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
33% identity, 74% coverage: 19:271/341 of query aligns to 2:247/250 of 7z16I
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
31% identity, 82% coverage: 16:293/341 of query aligns to 18:287/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
31% identity, 82% coverage: 16:293/341 of query aligns to 18:287/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
33% identity, 67% coverage: 39:265/341 of query aligns to 41:260/260 of 7ahdC
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 73% coverage: 19:268/341 of query aligns to 1:236/241 of 4u00A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 74% coverage: 16:269/341 of query aligns to 13:249/378 of P69874
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 73% coverage: 20:269/341 of query aligns to 3:239/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 73% coverage: 20:269/341 of query aligns to 3:239/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 73% coverage: 20:269/341 of query aligns to 3:239/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 73% coverage: 20:269/341 of query aligns to 3:239/242 of 2oljA
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
36% identity, 68% coverage: 17:248/341 of query aligns to 1:217/218 of 7w78A
>Ac3H11_694 FitnessBrowser__acidovorax_3H11:Ac3H11_694
MNAVLNTPQPMAPTDTAAPLLEIAHLRKHFGSGPHPVRAVDDVSFTIHRGETLGLVGESG
SGKSTIGRLLTRLVDPTSGQMRYHGGAAPQDLAQLSQSQYRPLRSQIQIIFQDPYASLNP
RMRIRDVLAEALDTHGLAKGAARLPRIHQLLEQVGLRPEHAERFPHEFSGGQRQRIGIAR
ALAVEPQFIVADEPLSALDVSIQAQVVNLLGELKEQLGLTLLFISHDLDVVEYLCDRVVV
LYLGRVMEIAPTEALYAQPQHPYTQALLAAAPIPDPAQRRSIALLQGDLPSPANPPSGCV
FRTRCPQAEARCASADMQLREVAPGHLHACWKTAPLSHANP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory