Comparing Ac3H11_797 FitnessBrowser__acidovorax_3H11:Ac3H11_797 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
Q9SS48 Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial; Protein SUGAR-DEPENDENT 6; EC 1.1.5.3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
39% identity, 95% coverage: 3:508/530 of query aligns to 52:593/629 of Q9SS48
2rgoA Structure of alpha-glycerophosphate oxidase from streptococcus sp.: A template for the mitochondrial alpha-glycerophosphate dehydrogenase (see paper)
30% identity, 86% coverage: 47:504/530 of query aligns to 41:525/557 of 2rgoA
Sites not aligning to the query:
3da1A X-ray structure of the glycerol-3-phosphate dehydrogenase from bacillus halodurans complexed with fad. Northeast structural genomics consortium target bhr167.
36% identity, 72% coverage: 26:409/530 of query aligns to 20:345/496 of 3da1A
2rgoB Structure of alpha-glycerophosphate oxidase from streptococcus sp.: A template for the mitochondrial alpha-glycerophosphate dehydrogenase (see paper)
31% identity, 86% coverage: 47:504/530 of query aligns to 39:496/530 of 2rgoB
Sites not aligning to the query:
2qcuB Crystal structure of glycerol-3-phosphate dehydrogenase from escherichia coli (see paper)
30% identity, 87% coverage: 48:509/530 of query aligns to 27:497/501 of 2qcuB
Sites not aligning to the query:
2r46A Crystal structure of escherichia coli glycerol-3-phosphate dehydrogenase in complex with 2-phosphopyruvic acid. (see paper)
30% identity, 85% coverage: 48:498/530 of query aligns to 27:486/495 of 2r46A
Sites not aligning to the query:
2r45A Crystal structure of escherichia coli glycerol-3-phosphate dehydrogenase in complex with 2-phospho-d-glyceric acid (see paper)
30% identity, 85% coverage: 48:498/530 of query aligns to 27:486/495 of 2r45A
Sites not aligning to the query:
>Ac3H11_797 FitnessBrowser__acidovorax_3H11:Ac3H11_797
MTTASAPLPTQRADLLARLAQPHHYDLAVIGGGATGLGVALDAAARGFSVVLVDSHDFAK
GTSSRATKLVHGGVRYLAQGNIALVREALHERTTLLHNAPHLAQPLPFVMPSYRFWETPF
YGIGLMMYDALAGKAGLGATQFLGRARTLACLPTARTEGLKGGVKYWDGQFDDARLALAL
ARTAASLGALVVNYCPARALVHEAGKVAGFVCEDADSGQQFTVRARTVVNATGVWVDSLR
QMDGEAIGRPVKPIVAPSQGVHIVVDREFLPSDHALMVPKTADGRVLFAVPWLGKLILGT
TDSPRQDIVREPEPFREEVRFILEESARYLTRAPKAEDIRSIWVGLRPLVKPQDDDGDNT
KKISREHTVLASRSGLITVTGGKWTTYRAMAEDVLQKCFATGLLPTKPAGVTNQLPLVGT
PQAPVQHRISDAQGLHSYGSEAAAVLAIPGAQTVLGGGLTEAMVRFAARHEYACTVEDVL
ARRSRLLFLDARQAIQLAPVVAGILREELGGDPQLEAFLALAQQYLHVPL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory