SitesBLAST
Comparing BPHYT_RS01770 BPHYT_RS01770 carbon monoxide dehydrogenase to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
4zohC Crystal structure of glyceraldehyde oxidoreductase (see paper)
55% identity, 88% coverage: 3:154/172 of query aligns to 10:160/161 of 4zohC
- binding fe2/s2 (inorganic) cluster: C47 (= C41), S50 (≠ A44), C52 (= C46), G53 (= G47), C55 (= C49), C67 (= C61), C106 (= C100), G107 (= G101), C109 (= C103), C141 (= C135), C143 (= C137)
- binding pterin cytosine dinucleotide: Q105 (= Q99), C143 (= C137)
P19921 Carbon monoxide dehydrogenase small chain; CO dehydrogenase subunit S; CO-DH S; EC 1.2.5.3 from Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) (Oligotropha carboxidovorans) (see 2 papers)
58% identity, 83% coverage: 5:147/172 of query aligns to 6:149/166 of P19921
- C42 (= C41) binding
- C47 (= C46) binding
- C50 (= C49) binding
- C62 (= C61) binding
- C102 (= C100) binding
- C105 (= C103) binding
- C137 (= C135) binding
- C139 (= C137) binding
1n5wA Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
58% identity, 83% coverage: 5:147/172 of query aligns to 4:147/161 of 1n5wA
- binding flavin-adenine dinucleotide: S43 (≠ A44), H44 (≠ Q45)
- binding fe2/s2 (inorganic) cluster: I38 (= I39), G39 (= G40), C40 (= C41), S43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), C60 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C135 (= C135), C137 (= C137)
1n5wD Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
58% identity, 83% coverage: 5:147/172 of query aligns to 4:147/158 of 1n5wD
- binding flavin-adenine dinucleotide: S43 (≠ A44), H44 (≠ Q45)
- binding fe2/s2 (inorganic) cluster: C40 (= C41), S43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), C60 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C135 (= C135), C137 (= C137)
- binding pterin cytosine dinucleotide: Q99 (= Q99), C137 (= C137)
1ffuD Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava which lacks the mo-pyranopterin moiety of the molybdenum cofactor (see paper)
53% identity, 88% coverage: 5:156/172 of query aligns to 5:156/156 of 1ffuD
- binding fe2/s2 (inorganic) cluster: C41 (= C41), S44 (≠ A44), H45 (≠ Q45), C46 (= C46), G47 (= G47), C49 (= C49), C61 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C135 (= C135), C137 (= C137)
1ffvA Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava (see paper)
53% identity, 88% coverage: 5:156/172 of query aligns to 4:155/155 of 1ffvA
- binding fe2/s2 (inorganic) cluster: I38 (= I39), C40 (= C41), S43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), C60 (= C61), C99 (= C100), G100 (= G101), C102 (= C103), C134 (= C135), C136 (= C137)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q98 (= Q99), C136 (= C137)
7dqxC Crystal structure of xanthine dehydrogenase family protein
47% identity, 86% coverage: 2:149/172 of query aligns to 3:151/160 of 7dqxC
- binding fe2/s2 (inorganic) cluster: C42 (= C41), G45 (≠ A44), V46 (≠ Q45), C47 (= C46), C50 (= C49), R60 (≠ K59), C62 (= C61), Q100 (= Q99), C101 (= C100), C104 (= C103), C137 (= C135), C139 (= C137)
- binding pterin cytosine dinucleotide: Q100 (= Q99), C139 (= C137)
5y6qA Crystal structure of an aldehyde oxidase from methylobacillus sp. Ky4400 (see paper)
47% identity, 88% coverage: 3:154/172 of query aligns to 3:155/157 of 5y6qA
- binding fe2/s2 (inorganic) cluster: G40 (= G40), C41 (= C41), D42 (= D42), G44 (≠ A44), C46 (= C46), G47 (= G47), C49 (= C49), C61 (= C61), C101 (= C100), G102 (= G101), C104 (= C103), C136 (= C135), C138 (= C137)
- binding pterin cytosine dinucleotide: Q100 (= Q99), C138 (= C137)
1t3qA Crystal structure of quinoline 2-oxidoreductase from pseudomonas putida 86 (see paper)
45% identity, 87% coverage: 3:151/172 of query aligns to 4:152/162 of 1t3qA
- binding fe2/s2 (inorganic) cluster: I40 (= I39), C42 (= C41), E43 (≠ D42), G45 (≠ A44), C47 (= C46), G48 (= G47), C50 (= C49), R60 (≠ K59), C62 (= C61), C101 (= C100), G102 (= G101), C104 (= C103), C136 (= C135), C138 (= C137)
- binding pterin cytosine dinucleotide: Q100 (= Q99), C138 (= C137)
P77165 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA; EC 1.2.99.6 from Escherichia coli (strain K12) (see paper)
43% identity, 90% coverage: 3:156/172 of query aligns to 61:229/229 of P77165
- C99 (= C41) binding
- C104 (= C46) binding
- G105 (= G47) binding
- C107 (= C49) binding
- C119 (= C61) binding
- C158 (= C100) binding
- C161 (= C103) binding
- C208 (= C135) binding
- C210 (= C137) binding
1sb3C Structure of 4-hydroxybenzoyl-coa reductase from thauera aromatica (see paper)
45% identity, 83% coverage: 5:147/172 of query aligns to 5:147/161 of 1sb3C
- binding fe2/s2 (inorganic) cluster: Q39 (≠ I39), C41 (= C41), G44 (≠ A44), C46 (= C46), G47 (= G47), C49 (= C49), C61 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C135 (= C135), C137 (= C137)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C137 (= C137)
5g5gA Escherichia coli periplasmic aldehyde oxidase (see paper)
43% identity, 87% coverage: 3:151/172 of query aligns to 10:173/175 of 5g5gA
- binding fe2/s2 (inorganic) cluster: G47 (= G40), C48 (= C41), D49 (= D42), G51 (≠ A44), C53 (= C46), G54 (= G47), C56 (= C49), C68 (= C61), C107 (= C100), G108 (= G101), C110 (= C103), C157 (= C135), C159 (= C137)
3hrdD Crystal structure of nicotinate dehydrogenase (see paper)
41% identity, 87% coverage: 3:152/172 of query aligns to 4:153/160 of 3hrdD
- binding flavin-adenine dinucleotide: E44 (≠ T43), G45 (≠ A44), E46 (≠ Q45)
- binding fe2/s2 (inorganic) cluster: E40 (≠ I39), C42 (= C41), S43 (≠ D42), G45 (≠ A44), C47 (= C46), G48 (= G47), C50 (= C49), C62 (= C61), Q100 (= Q99), C101 (= C100), G102 (= G101), C104 (= C103), C136 (= C135), C138 (= C137)
- binding pterin cytosine dinucleotide: Q100 (= Q99), C138 (= C137)
Q0QLF3 Nicotinate dehydrogenase small FeS subunit; NDH; Nicotinic acid hydroxylase small FeS subunit; NAH; EC 1.17.1.5 from Eubacterium barkeri (Clostridium barkeri) (see paper)
41% identity, 87% coverage: 3:152/172 of query aligns to 4:153/157 of Q0QLF3
- C42 (= C41) binding
- C47 (= C46) binding
- C50 (= C49) binding
- C62 (= C61) binding
- C101 (= C100) binding
- C104 (= C103) binding
- C136 (= C135) binding
- C138 (= C137) binding
4usaA Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with trans-cinnamaldehyde (see paper)
44% identity, 87% coverage: 3:151/172 of query aligns to 2:153/907 of 4usaA
- binding fe2/s2 (inorganic) cluster: V38 (≠ I39), C40 (= C41), E41 (≠ D42), G43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), R58 (≠ K59), C60 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C135), C139 (= C137)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C137)
Sites not aligning to the query:
- active site: 390, 425, 501, 505, 533, 869, 870
- binding bicarbonate ion: 460, 531, 532, 535, 539
- binding hydrocinnamic acid: 255, 425, 494, 497, 535, 626
- binding magnesium ion: 899, 903
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 420, 421, 422, 533, 650, 653, 654, 655, 656, 695, 696, 697, 700, 701, 799, 800, 804, 807, 865, 866, 867, 868, 869
4us9A Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with 3- phenylpropionaldehyde (see paper)
44% identity, 87% coverage: 3:151/172 of query aligns to 2:153/907 of 4us9A
- binding fe2/s2 (inorganic) cluster: V38 (≠ I39), C40 (= C41), E41 (≠ D42), G43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), R58 (≠ K59), C60 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C135), C139 (= C137)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C137)
Sites not aligning to the query:
- active site: 390, 425, 501, 505, 533, 869, 870
- binding 3-phenylpropanal: 255, 257, 258, 752
- binding bicarbonate ion: 460, 498, 531, 532, 535, 539, 890, 892
- binding magnesium ion: 899, 903
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 420, 421, 422, 533, 650, 653, 654, 655, 656, 695, 696, 697, 700, 701, 799, 800, 804, 807, 865, 866, 867, 868, 869
4us8A Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with benzaldehyde (see paper)
44% identity, 87% coverage: 3:151/172 of query aligns to 2:153/907 of 4us8A
- binding fe2/s2 (inorganic) cluster: V38 (≠ I39), C40 (= C41), E41 (≠ D42), G43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), R58 (≠ K59), C60 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C135), C139 (= C137)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C137)
Sites not aligning to the query:
- active site: 390, 425, 501, 505, 533, 869, 870
- binding bicarbonate ion: 460, 498, 531, 532, 535, 539
- binding benzaldehyde: 255, 255, 394, 425, 425, 425, 425, 497, 497, 501, 531, 535, 535, 626, 626, 626, 694, 696, 697
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 420, 421, 422, 533, 653, 654, 655, 656, 695, 696, 697, 700, 701, 799, 800, 804, 807, 865, 866, 867, 868, 869
4c7yA Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with sodium dithionite and sodium sulfide (see paper)
44% identity, 87% coverage: 3:151/172 of query aligns to 2:153/907 of 4c7yA
- binding fe2/s2 (inorganic) cluster: C40 (= C41), E41 (≠ D42), G43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), R58 (≠ K59), C60 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C135), C139 (= C137)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C137)
Sites not aligning to the query:
- active site: 390, 425, 501, 505, 533, 869, 870
- binding bicarbonate ion: 460, 498, 531, 535, 539
- binding magnesium ion: 899, 903
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 420, 421, 422, 533, 650, 653, 654, 655, 656, 695, 696, 700, 701, 799, 800, 804, 807, 865, 866, 867, 868, 869
- binding hydrogen peroxide: 696, 697, 869
3fc4A Ethylene glycol inhibited form of aldehyde oxidoreductase from desulfovibrio gigas (see paper)
44% identity, 87% coverage: 3:151/172 of query aligns to 2:153/907 of 3fc4A
- binding fe2/s2 (inorganic) cluster: V38 (≠ I39), C40 (= C41), E41 (≠ D42), G43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), R58 (≠ K59), C60 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C135), C139 (= C137)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C137)
Sites not aligning to the query:
- active site: 390, 425, 501, 505, 533, 869, 870
- binding 1,2-ethanediol: 535, 622, 696, 697, 869
- binding magnesium ion: 899, 903
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 419, 420, 421, 422, 533, 650, 653, 654, 655, 656, 695, 696, 700, 701, 799, 800, 804, 807, 865, 866, 867, 868, 869
3fahA Glycerol inhibited form of aldehyde oxidoreductase from desulfovibrio gigas (see paper)
44% identity, 87% coverage: 3:151/172 of query aligns to 2:153/907 of 3fahA
- binding fe2/s2 (inorganic) cluster: V38 (≠ I39), C40 (= C41), E41 (≠ D42), G43 (≠ A44), C45 (= C46), G46 (= G47), C48 (= C49), R58 (≠ K59), C60 (= C61), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C135), C139 (= C137)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C137)
Sites not aligning to the query:
- active site: 390, 425, 501, 505, 533, 869, 870
- binding glycerol: 416, 535, 622, 683, 696, 697, 869, 884, 889, 890, 892
- binding magnesium ion: 899, 903
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 419, 420, 421, 422, 533, 650, 653, 654, 655, 656, 695, 696, 700, 701, 799, 800, 804, 807, 865, 866, 867, 868, 869
Query Sequence
>BPHYT_RS01770 BPHYT_RS01770 carbon monoxide dehydrogenase
MAISISLTVNGAPISASIDPGTLLVQFLRDQLRLTGTHIGCDTAQCGACTVHLNGRAIKS
CNILAVQAEGADITTIEGLAKDGALHPMQAAFKHCHGLQCGFCTPGMVMSAVSLVQRQPD
LTGDDVRAQLDGNLCRCTGYHNIVKAVLEGAEGMKSADTANANAQATAPATA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory