Comparing BPHYT_RS01820 FitnessBrowser__BFirm:BPHYT_RS01820 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
41% identity, 91% coverage: 18:510/544 of query aligns to 4:490/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
31% identity, 40% coverage: 17:235/544 of query aligns to 1:217/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 43% coverage: 31:266/544 of query aligns to 18:256/343 of P30750
Sites not aligning to the query:
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 42% coverage: 289:516/544 of query aligns to 18:237/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 42% coverage: 289:516/544 of query aligns to 18:237/238 of 6s8gA
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
30% identity, 43% coverage: 31:266/544 of query aligns to 19:257/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
30% identity, 43% coverage: 31:266/544 of query aligns to 19:257/344 of 3tuiC
Sites not aligning to the query:
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 40% coverage: 18:235/544 of query aligns to 4:231/253 of 1g9xB
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
34% identity, 38% coverage: 289:496/544 of query aligns to 18:217/234 of 6b89A
Sites not aligning to the query:
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
34% identity, 38% coverage: 289:496/544 of query aligns to 18:217/234 of 4p31A
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
30% identity, 43% coverage: 31:266/544 of query aligns to 19:257/344 of 6cvlD
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
34% identity, 38% coverage: 289:496/544 of query aligns to 18:217/233 of 6b8bA
Sites not aligning to the query:
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
34% identity, 38% coverage: 289:496/544 of query aligns to 18:217/235 of 6mhzA
Sites not aligning to the query:
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
33% identity, 38% coverage: 289:496/544 of query aligns to 18:217/240 of 6mjpA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 40% coverage: 18:235/544 of query aligns to 4:231/254 of 1g6hA
6mbnA Lptb e163q in complex with atp (see paper)
31% identity, 42% coverage: 289:516/544 of query aligns to 19:238/241 of 6mbnA
Sites not aligning to the query:
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
31% identity, 40% coverage: 16:233/544 of query aligns to 2:222/648 of P75831
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
28% identity, 42% coverage: 6:231/544 of query aligns to 5:225/378 of P69874
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
28% identity, 38% coverage: 29:237/544 of query aligns to 37:246/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
28% identity, 38% coverage: 29:237/544 of query aligns to 37:246/382 of 7aheC
Sites not aligning to the query:
>BPHYT_RS01820 FitnessBrowser__BFirm:BPHYT_RS01820
MTESGKETPHSPLTRSPLLEMQDIGISFGGVPALRSANLSVAAGEVHALIGQNGAGKSTM
IKILTGAYRRGSGSVRFEGREVDFRTPKQAREAGISTIYQEINLVPFRSVAENIFLGREP
RRFGLIDWHAVQQRAAALLESFGLQIDVKKPVGRYSTAIQQMVALARAVSSDAKMVIMDE
STSSLDEREVELLFTVVRKLRDDGRAVIFVSHRLDELYALCDRVTVMRDGQTVAQSTMAD
MDKLQLVTTMLGRTLAAVVQDDAEAREANLARRGKQMIAATQLSAHPKVSDVSLEVHAGE
AVGLAGLLGSGRTETMRLMFGADPLERGSLSIGGETVALKSPQDAISRGLAYLTEDRKAE
GIVPELSVRDNLTLVCLRTLAKNGVVDVKKQQAIVDRFIASLGIKLRSADQPIRELSGGN
QQKVLLARWLAAEPSLLLLDEPTRGIDVGAKAEVAKIVRELRDAGLAVLLSASELEELTA
VADRAVVIRDGRTVAELNGADMSETAIMDAIAYGSDGHSQLAEAAQTANAAHIEDALEGD
RHGA
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Lawrence Berkeley National Laboratory