SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS02015 FitnessBrowser__BFirm:BPHYT_RS02015 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found no hits to proteins with known functional sites (download)

Query Sequence

>BPHYT_RS02015 FitnessBrowser__BFirm:BPHYT_RS02015
MTARLPIDGTPALADYKLSDNLTATRGRIFLTGTQALVRLVLMQRAADKARGMNTAGFIS
GYRGSPLGMVDQQLWKAKKLLAASDIRFLPAINEELGGTAVLGTQRVESDPERTVEGVFA
MWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMPHQSDFAMMAWHMPV
VNPSNIADMLEFGLYGWELSRFSGAWVGYKAISETVESGSTVDLDALRTDWTMPQDFEVP
AGGLHNRWPDLPSLTIESRMHAKLDAVRHFARVNSIDKWIAPSPHANVGIVTCGKAHLDL
METLRRLDLTVADLEAAGVRIYKVGLSFPLEMTRIDAFVSGLSEVLVIEEKGPVIEQQIK
DYLYNRTQGTRPIVVGKNAEDGTLLLSSLGELRPSRILPVFANWLAKHKPALDRRERVVD
LVAPQILSNAADSVKRTPYFCSGCPHNTSTKVPEGSIAHAGIGCHFMASWMERDTTGLIQ
MGGEGVDWASHSMFTKTRHVFQNLGDGTYFHSGILAIRQAVAAKATITYKILYNDAVAMT
GGQPVDGSISVPQIARQVEAEGVSRFVVVSDEPEKYDGHHDQFPKGTTFHHRSEMDTVQR
QLRDTDGVTVLIYDQTCAAEKRRRRKKGEFPDPDKRLFINEEVCEGCGDCGVQSNCLSVE
PVETALGRKRRIDQSSCNKDYSCVNGFCPSFVTVEGGKLKKAAGAAFDPQALAARVEALP
IPATHLDAAPYDILVTGVGGTGVVTVGALISMAAHLEGKSASVLDFMGFAQKGGSVLSFV
RFAARDEWLNQVRIDTQQADVLLACDMVVGASADALQTVRHGRTRIVVNTHAIPNATFVT
NPDATLHADALLDKMRHAAGAERMSTCDAQALATRFLGDTIGANILMLGYAWQLGLVPVS
FGAMMRAIELNNVAVQMNQLAFSIGRLAAEDPAALEALWQARHLAKQSVRVDTLDELIAH
REGRLQTYGGASYVKRYRALVDAARRAETSVDAKSERVTRAVATTFYRLLAVKDEYEVAR
LHTDAVFREALEAQFEGVAGKDFGIKFNLAPPTLTRPEPGKNPVKKTFGQWMWPVLGTLA
KFSSLRGTMLDPFGRTLERKMERELAGDYETTLQRALARLDAGNLEDVAKLADLHARVRG
YGHVKLANLAGVKRGERDLAARLQIEAATGESVRKSLEEMKGAGQLRGIPVVVAK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory